GgaEX1025676 @ galGal4
Exon Skipping
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5928440-5931227:+
Coord C1 exon
chr17:5928440-5928497
Coord A exon
chr17:5929125-5929247
Coord C2 exon
chr17:5931065-5931227
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCTCCCCCTTCCCAGGAG
3' ss Score
10.02
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
ACAGTGGCGGGATGCCTGAAAGGCCCTGTGTGCTCACCGGGACGCCAGAGAGCATTGA
Seq A exon
GAGCTGAGTTTGAGACTCTCACAAACCAGTTGAGGACCTTTTGCTGGAACTGGATCCAGGATCCTCAGGCTTACAGGAACACACTTAACATATGGAGCTGCTCTTTCTCTCCCCAGCCTTTGG
Seq C2 exon
ACAAGCAAAACGGCTACTGGGGCAGATTGTAGATCGCTGTCGGAACGGACCTGGTTTTCACAACGATGTTGATGGCAACAGTACGATTCAGGAGATTTTGATCCCGGCATCCAAAGTGGGTCTAGTCATCGGCAAAGGAGGTGAAACAATAAAACAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941_MULTIEX1-6/7=5-7
Average complexity
S
Mappability confidence:
86%=86=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=0.500 C2=0.091
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(30.2=100)
A:
PF0001324=KH_1=PD(1.7=33.3)
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Inclusion Isoform:
ENSGALT00000039554fB7719
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAAGGCCCTGTGTGCTC
R:
TGCAACTGTTTTATTGTTTCACCTCC
Band lengths:
205-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]