GgaINT0124188 @ galGal4
Intron Retention
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5928440-5931227:+
Coord C1 exon
chr17:5928440-5928497
Coord A exon
chr17:5928498-5931064
Coord C2 exon
chr17:5931065-5931227
Length
2567 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TCCCTCGATTCTTTTCCAAGACA
3' ss Score
4.51
Exon sequences
Seq C1 exon
ACAGTGGCGGGATGCCTGAAAGGCCCTGTGTGCTCACCGGGACGCCAGAGAGCATTGA
Seq A exon
GTGAGTTCTGATTTTATTCTTCTCCTTTCTCCTTCTCTCTTCTCCCTAATGCTGTGCTCTGTCAGTGGTGCTACTTGGTTAGCCACACCAGCAAATGCTGGCCTAGAGAAACTTGAGGGTCCTGGAACACTGAGCCTCTTGGTCTGATGCTTTGAATTGTGCACCTCAAAGGCATTTTTCCAGTTTCAGTTTGAACCCTCTGCAGAACTGTCCATGGAATTCCCCTCCGCAGGGCAAGGTTGCTCCTAGGGCACCTAGAATGCAGTTTTTGAACTGCAGCTTTCCAGAATATTTAGCTAAGCTGTTGAAGGGCACTTCTCTTCTCCCCTTCGCTTCCCTCCTATTGAGCTGACATCCTTGCAGCTGAAGAAGGTCTGCATGAGGCCTCCAAAGCCTGTTGGTGCCACTCCAAAGTTACCTGGAGGTGTTGGTGTTGCTGCAGAGCAGCACAAGGCCCATGGGTGTGCTTGCCTCTGCACTGCTGCCAACAAGAAGCAAAGGACTAAACCAGAAATTCTTGAATTCTGATCCCTGCATGGTACAGACACATGGCTAGCCAGCAGGGATTTCTACTCTTTAGGCCTATAGAAACTTTAGGGACAGTGTTTCCTCCCTCCCCCTTCCCAGGAGCTGAGTTTGAGACTCTCACAAACCAGTTGAGGACCTTTTGCTGGAACTGGATCCAGGATCCTCAGGCTTACAGGAACACACTTAACATATGGAGCTGCTCTTTCTCTCCCCAGCCTTTGGGTAGGTGGGTTTTTTAAAATCCATCTGGAAATCTTTGAGTTGCATTTGATAGTGACAATACATGGGCACAAAGACTGTCTCTCTAAAGAGAAGACACAACCATCATTCTTCCATTCCTAAGAGATCTGAGGGTACTTAACTCTTCTTACTCTGCCATAATGATGCAAGCGGTGAGCCAGAATAAGTGTAGTTGGTAAGCTCACATTACAGGGCAGGTAATGTATTCTTGCCGATACTGAAGTGTTTTTTCTCCCTTTGCTAAAGGATATTTCAGAACAAGAGCAAAATATTAAAAAAAAAAAAAAAAAAAAAACTGGGATGCCCAATAAAATACAGTTGAAGCAGAATGGGGGGAGAGGTACAGTGAAAAATTATTCATTATTCAAAAATATGCAGTTAAATGTCTTTAAATCAAAATAAAAGGACATGTGGCAATATGCAGTTTCTGAAGCAGAAAAAAAGTGTTAAGGATATGGAACCAGGTGAAATTTTGTTTGCTTCTGTGCTGATATTGTTGTCAAGTTAGTTGTTTGAACTACTTTTTCAGGTTATTCATAGGAAAAATTATCTGAAGTGAGAAAACACTTCAAAAACATCAGGTATCTAGATTGGTTTTGTGTGAGGAGTGTTTCCTTTAGTTATATCTGGAGGCAAACTAATAGAGCTAATTTCCCAGTGACCCCTTCTCATCTGATATGCGTGGTGTACTGAATGTTGTAATCTCCGTTGTCACACTTTATGCAAAATGTCAAGGTAAATGAGTAAAACCTTCCGAATCTTTCAAAGTATTTGAATCAGGCTTGAGAAATTCCACCTTTTGCCTTGTTTTGTGAGAAAGTTGAGAGAGGGCAGCACTCTGATCTTTGTACAGCCTCAGATCACCATCCCTTGAGCTGTCTTGAGTGAATGCCTGCTTGCAACGGATGGTTTCATACCATTTCTTCAAGTTTTTAGAGAGAATACTGTCTGTGTGCGTTGCCTGATGTGCCTGGGTATGAAAAAGGGAACACCCTGCTCTTGACTGAGCAGGGAACTGGTGGCTTTCTTCTGCCTATTAGAGAAGTGTTCTTGGAAATGGGCAGTAAAGGGATGTGTTGATAATAGCAGTCCTTATGATGAAGGGAAGATGTGTCAGCTACTTCTGACGTGCTAAAAATGCTTAGAGAAGGTATCTTTGCTTTTTCGTGTCTGTCTCTTTTCATGAGGAGCAGAAGAACCCAGTCTTCCACTGGTTGCTGCTACAGTGTCCTTGCCTTGCTTCCTAGTGTAGCTTTAGCACCTGCTGCTTGGGGCAGAGGCTGTGTCAGAGCAGTGTTCTGGTGCTGCTGGTGAGGGCGGGCAGAGAAGAGCAAGGCATTGTCTGTGAGGGATCAGAGTGGTTCACCAGTGTGCTGTGTTAGTATTGAAGCACCGTCTGTTTTGTCTTGATCGAGAAGGAGAACAGAGCTTGAGGGGTTTTTTTACCAAATATTACATATACGTGGGAGAAATCAGTTTAGAGGACTTCAGGATGTAGAGCATCTTCATTCAAATTGTGCACCCCAAATGTAACAGCTCCTTAACTTCCAAAGATGTTGGAGCATGCTGCTGCTCTTTCTTCTCTCTTCCCCTTACAAAAAATCAAGCTGCTTATAAGTAATCACGATAGGGGAAATTGGATACCGCCCTCCCCCCCCCCCAAAAATAAAGTTGTGCTAACTGGTTTCCTTCATCTTTTCACTTCTCTCCCCGATTGCTTCACATTCCAATGGTTCCAAGTCTCTTGGTCACACGGAACAATGTTGTCTAATGGTTGTTTCCCTCGATTCTTTTCCAAG
Seq C2 exon
ACAAGCAAAACGGCTACTGGGGCAGATTGTAGATCGCTGTCGGAACGGACCTGGTTTTCACAACGATGTTGATGGCAACAGTACGATTCAGGAGATTTTGATCCCGGCATCCAAAGTGGGTCTAGTCATCGGCAAAGGAGGTGAAACAATAAAACAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941:ENSGALT00000039554:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(30.2=100)
A:
NA
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]