GgaINT0124188 @ galGal3
Intron Retention
Gene
ENSGALG00000003941 | FUBP3
Description
NA
Coordinates
chr17:6519027-6521812:+
Coord C1 exon
chr17:6519027-6519084
Coord A exon
chr17:6519085-6521649
Coord C2 exon
chr17:6521650-6521812
Length
2565 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TCCCTCGATTCTTTTCCAAGACA
3' ss Score
4.51
Exon sequences
Seq C1 exon
ACAGTGGCGGGATGCCTGAAAGGCCCTGTGTGCTCACCGGGACGCCAGAGAGCATTGA
Seq A exon
GTGAGTTCTGATTTTATTCTTCTCCTTTCTCCTTCTCTCTTCTCCCTAATGCTGTGCTCTGTCAGTGGTGCTACTTGGTTAGCCACACCAGCAAATGCTGGCCTAGAGAAACTTGAGGGTCCTGGAACACTGAGCCTCTTGGTCTGATGCTTTGAATTGTGCACCTCAAAGGCATTTTTCCAGTTTCAGTTTGAACCCTCTGCAGAACTGTCCATGGAATTCCCCTCCGCAGGGCAAGGTTGCTCCTAGGGCACCTAGAATGCAGTTTTTGAACTGCAGCTTTCCAGAATATTTAGCTAAGCTGTTGAAGGGCACTTCTCTTCTCCCCTTCGCTTCCCTCCTATTGAGCTGACATCCTTGCAGCTGAAGAAGGTCTGCATGAGGCCTCCAAAGCCTGTTGGTGCCACTCCAAAGTTACCTGGAGGTGTTGGTGTTGCTGCAGAGCAGCACAAGGCCCATGGGTGTGCTTGCCTCTGCACTGCTGCCAACAAGAAGCAAAGGACTAAACCAGAAATTCTTGAATTCTGATCCCTGCATGGTACAGACACATGGCTAGCCAGCAGGGATTTCTACTCTTTAGGCCTATAGAAACTTTAGGGACAGTGTTTCCTCCCTCCCCCTTCCCAGGAGCTGAGTTTGAGACTCTCACAAACCAGTTGAGGACCTTCTGCTGGAACTGGATCCAGGATCCTCAGGCTTACAGGAACACACTTAACATATGGAGCTGCTCTTTCTCTCCCCAGCCTTTGGGTAGGTGGGTTTTTTAAAATCCATCTGGAAATCTTTGAGTTGCATTTGATAGTGACAATACATGGGCACAAAGACTGTCTCTCTAAAGAGAAGACACAACCATCATTCTTCCATTCCTAAGAGATCTGAGGGTACTTAACTCTTCTTACTCTGCCATAATGATGCAAGCGGTGAGCCAGAATAAGTGTAGTTGGTAAGCTCACATTACAGGGCAGGTAATGTATTCTTGCCGATACTGAAGTGTTTTTTCTCCCTTTGCTAAAGGATATTTCAGAACAAGAGCAAAATATTAAAAAAAAAAAAAAAAAAAAACTGGGATGCCCAATAAAATACAGTTGAGGCAGAATGGGGGAGAGGTACAGTGAAGAATTATTCATTATTCAGAAATATGCAGTTAAATGTCTTTAAATCAAAATAAAAGGACATGTGGCAATATGCAGTTTCTGAAGCAGAAGAAAAGTGTTAAGGATATGGAACCAGGTGAAATTTTGTTTGCTTCTATGCTGATATTGTTGTCAAGTTAGTTGTTTGAACTACTTTTTCAGGTTATTCATAGGAAAAATTATATGAAGTGAGAAAACACTTCAAAAACATCAGGTATCTAGATTGGTTTTGTGTGAGGAGTGTTTCCTTTAGTTATATCTGGAGGCAAACTAATAGAGCTAATTTCCCAGTGACCCCTTCTCATCTGATATGCGTGGTGTACTGAATGTTGTAATCTCCGTTGTCACACTTTATGCAAAATGTCAAGGTAAATGAGTAAAACCTTCCGAATCTTTCAGAGTATTTGAATCAGGCTTGAGAAATTCCACCTTTTGCCTTGTTTTGTGAGAAAGTTGAGAGAGGGCAGCACTCTGATCTTTGTACAGCCTCAGATCACCATCCCTTGAGCTGTCTTGAGTGAATGCCTGCTTGCAACGGATGGTTTCATACCATTTCTTCAAGTTTTTAGAGAGAATACTGTCTGTGTGCGTTGCCTGATGTGCCTGGGTATGAAAAAGGGAACACCCTGCTCTTGACTGAGCAGGGAACTGGTGGCTTTCTTCTGCCTATTAGAGAAGTGTTCTTGGAAATGGGCAGTAAAGGGATGTGTTGATAATAGCAGTCCTTATGATGAAGGGAAGATGTGTCAGCTACTTCTGACGTGCTAAAAATGCTTAGAGAAGGTATCTTTGCTTTTTCGTGTCTGTCTCTTTTCATGAGGAGCAGAAGAACCCAGTCTTCCACTGGTTGCTGCTACAGTGTCCTTGCCTTGCTTCCTAGTGTAGCTTTAGCACCTGCTGCTTGGGGCAGAGGCTGTGTCAGAGCAGTGTTCTGGTGCTGCTGGTGAGGGCGGGCAGAGAAGAGCAAGGCATTGTCTGTGAGGGATCAGAGTGGTTCACCAGTGTGCTGTGTTAGTATTGAAGCACCGTCTGTTTTGTCTTGATCGAGAAGGAGAACAGAGCTTGAGGGTTTTTTTTACCAAATATTACATATACGTGGGAGAAATCAGTTTAGAGGACTTCAGGATGTAGAGCATCTTCATTCAAATTGTGCACCCCAAATGTAACAGCTCCTTAACTTCCAAAGATGTTGGAGCATGCTGCTGCTCTTTCTTCTCTCTTCCCCTTACAAAAAATCAAGCTGCTTATAAGTAATCACGATAGGGGAAATTGGATACCGCCCTCCCCCCCCCCCAAAAATAAAGTTGTGCTAACTGGTTTCCTTCATCTTTTCACTTCTCTCCCCGATTGCTTCACATTCCAATGGTTCCAAGTCTCTTGGTCACACGGAACAATGTTGTCTAATGGTTGTTTCCCTCGATTCTTTTCCAAG
Seq C2 exon
ACAAGCAAAACGGCTACTGGGGCAGATTGTAGATCGCTGTCGGAACGGACCTGGTTTTCACAACGATGTTGATGGCAACAGTACGATTCAGGAGATTTTGATCCCGGCATCCAAAGTGGGTCTAGTCATCGGCAAAGGAGGTGAAACAATAAAACAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941:ENSGALT00000039554:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(30.2=100)
A:
NA
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]