HsaINT0066563 @ hg19
Intron Retention
Gene
ENSG00000107164 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005]
Coordinates
chr9:133489675-133491904:+
Coord C1 exon
chr9:133489675-133489732
Coord A exon
chr9:133489733-133491741
Coord C2 exon
chr9:133491742-133491904
Length
2009 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
GGTTCTTTTCCCTCCCAAAGACA
3' ss Score
5.61
Exon sequences
Seq C1 exon
AGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGA
Seq A exon
GTAAGTTTATTTTATTTACTTTTTCTTTCACTCTTCTTCCTCCTTCCCCAAATGGGGAGAAATGGAAGGGCAACACTGTTACTGAACACTGAGTCTGTGCTGCAGTCTGGCCACACAGGTAGATAATTCCATAGGAAAAAAATCTGGGAGGTTACTGTGCCAGGGGTTTTTGTTACCTTAAATACACGAGATATCACATTTGTTCTAAACCCCACAGCTGTCATAACATCTACTTCAAACCAGGGTCTCAGGAGTGTACATTCACCCCACCTGAATGCTCTAATCAACTTACTTCTTCCTTGTTAACACCTCCTTTACCTGAGCAGGTCTGGATTAGTAAGCCAGTCACTTGGTGAGCTACTGAGAATCCTGGTACCAGGACTTTTGGCTGGAGGCTGATCCCGTTACCCTTCTGATATTTGTGAACCAAATGAATCAACTCTTCGTGACTTTGCTCTACTCAGAGGGCCGTACGGACTGGCCAGAGGATGTCTTGACTTTTGGCGCCCTTGCAACAGTCTTAAGACTAACATTGCTTTCCTACCCTGTTACTCACATACTCAGAACCTTATACCAGGTGCAGGTGTCATAAATCCAAGAATCTCCTGGGAAAGGGAAACATACTGACTTAGAGCCTGCTCACTGTCCTTCAATCTACGGAGCAGCACTGCATTTGGGGACAGGGGTGCTAAGATTATATCTGACTCAATAGGTAGGGTTGTTTTATTGTTTCCATTTCTCAGGGAGTCTAGATGAGCTTAAAGTCTCTTGTTCTGCCATCACATTGCAAGCAGTGAACCATAATAAATATCGCTGGCAGGTGTGCATTACAGGGCAACTGGATGGTTTGCTGGAGTCAAAGCATTTTTCTTCCAACACAGGTTAATCTAGTACACAGGCAAAATATTAAAAAGCTGCTGTAACTGGGAAGATACACGAAGCTGATTCTGTACACAAAGGCTCAAGACTACAAAAGGCAACATCTATTTCCTGCCTTTCTCTTCTTTCTTCCTACTCTTCTAACCATTCCTGCTTCCTGTCTACCCAAGGAGCAGAGGCAGTGGGATTATAACTTTAGGAGGAAACAAATTTCATTGTCTTCAGTGAGCAGCACAGCTAGCCTGTTTAGTAGCTGAATTCTTCTCCATTAGAGAAACCAAAAAGCAGATTGTGTGTGGCAATTTAGAGAATCAATACGAGAAATAACAACCAGGAGAAATTCTGGTGCAGAAAAGGAAATTGGCACAGCAGATGACTTTGGTGGTCTGGGCTGTGCTGTCACAACATTGCAGTTGCCCTCTCCCGCTGCCCAAGAAACCAACACAAATAGCAGGACACGTGACACGCAGGGTCCCAACTTGGCTGCCATGGAAAGCCCAAAGCAGGTGTCTGTGAGTGCACAGCTGCATCCAGCACCGCCTCCCCCTTTCCCACCTCTTGGAACCAAACTGGGATTCATAGCCTTAGCTTAAAAGTCATAGAGCAGTGTTGTTGGTTATGAAGAAGAAGCGTGGAGTATGGGAGTTCAGACAGTGAGTACTAATCCTTGCTTGCTTTCTTCCCATCTTTCTCATTGCTGGCTCTCTCTCCTGCCTGCATTTATTTAACAAATGTATATATTGAGTCTACTCTGTGAGAAGGGTCATGTTGGATGGGGGAACAGAGAGATGTAAAGGGATGAAAGATGGTCTCTGCCTCCAGAGCAGCTGGCATCCTAATAGGAGACGACACCTTTGTGGAGACACAAGCATGAGCAGAGGGCAGGCTTGAAAGGGGCGGCAAGGCTCTGTGTCACAGCGTTGGTACTGTGGTGTGTGTTGCTTTTAAATTCCAGCCCGGTAGCGTGGCGGATGGCAGAGAGACCTCCGGGTTGTGGGGGCAGGAGCTGGAGCTGGATGGAGGGCTGCCCTGACTCCCGCAGGTTTTTCCCTCAGTGCTATTTCCCTGTCTTGCACACTTAGAGCCTCCATTTAATGCTGGTTCTCTTGTGGTTCTTTTCCCTCCCAAAG
Seq C2 exon
ACAAGCCAAACGGCTCCTGGGACAGATTGTGGACCGCTGTCGAAATGGACCTGGCTTTCATAATGACATAGACAGCAACAGCACAATCCAGGAGATTCTCATTCCCGCATCTAAAGTGGGTCTGGTCATCGGCAGAGGAGGGGAAACAATCAAGCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-FUBP3:NM_003934:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(30.2=100)
A:
NA
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)