DreINT0011652 @ danRer10
Intron Retention
Gene
ENSDARG00000086896 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr5:858905-859626:+
Coord C1 exon
chr5:858905-858962
Coord A exon
chr5:858963-859463
Coord C2 exon
chr5:859464-859626
Length
501 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGA
5' ss Score
6.87
3' ss Seq
CTCTGATTGGCTGTTTCCAGGCA
3' ss Score
6.61
Exon sequences
Seq C1 exon
ACAGCGGTGGTATGATGGATCGGCCCTGCACCCTGACCGGGACCCCAGAGAGTATCGA
Seq A exon
GTAAGACGAAATAACCATCAATATTCTTCTTTTAATGAACAGTTTAACCCACCACAAAACACTCAAAACGTGTCATTGCATCAATTTACTTGTATAAATGTGTGCAAATATATTCATTTATTAATTTACATTTTTATCTAATATACTGTTGAATATCATGTTAATGTTTAGGTGTTTTGTGTACAATATTGTGCTTTGTGTGTGTTACAATGTTCAATACAGCTCTTAGCTTAAGTGAGTAACTGGTCTTGGGCTGCAGGGTGATAAGGCTGTGGCAGTAATATCAACCTTTGCATAAACAGATGATGTTTAATAAAGGGTATTTCTTTTAAATTGCACAATAAATGCAATTAAATTAACAAAACATACAATTAAACTTACCTTACGCCTCTTTGGAGTGGAGCTGCACAAATGTTGAATCTGTATATCCTGCTTTTTGTGTCCTGTCCTGTTGCATTGAGCTTGATTAACCAGTGGTCGTCTCTGATTGGCTGTTTCCAG
Seq C2 exon
GCAGGCTAAGCGTCTGCTGGGTCAGATAGTGGACCGCTGTCGGAACGGGCCGGGTTTCCACAGTCAGATGGACGGCAGCAGCGCGGTGCAGGAGATCCTGATCCCGGCCAGTAAAGTGGGCCTGGTCATCGGGAAAGGAGGAGACACCATTAAACAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086896:ENSDART00000166336:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(30.2=100)
A:
NA
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(39.7=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGTGGTATGATGGATCG
R:
TGCAGTTGTTTAATGGTGTCTCCT
Band lengths:
219-720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]