MmuINT0066476 @ mm9
Intron Retention
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31452114-31454220:+
Coord C1 exon
chr2:31452114-31452171
Coord A exon
chr2:31452172-31454057
Coord C2 exon
chr2:31454058-31454220
Length
1886 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
GATTTTTCTCCCTCCCAAAGACA
3' ss Score
6.62
Exon sequences
Seq C1 exon
AGAGTTCTGGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGA
Seq A exon
GTAAGTTTGTTTTATTTACTTTTTCCTTTCACTTCTTCTTCCTCCTTCCCCAAGTGAGGAGAAACGGAAGGGCAGTACTGCTGCTGCATACTGTCCCTCTGTGCTGAGTCTGCCCACAGCACACCTCCAGTAGCAGAAAGACCTGGGAGCTTACCACACCACACCAGGACAGCTCTTCTTTTAGCCCAAACACACAAGCCCAGAATGCCTCCTAGCTGTCATGACCTCTCCATAAATCAGGGGCTGAGCAGTGGACACTCATCCTGGCTAATCACACTAATCAGCAACCTCCTTGTTAACACCTCCCATACCTGAACAGACCTGGATCAGAGGATTTGATCACTTTGTGAGCTTAAAAAACTGGGTACCAGGCGTTTTCCCTGGGCCAATTGATCTGCTTACTCTTTTGATGCTTGCGAACCAAGTGAATCCACTGTCCTTTGCTCCACTCACAGAGCCTGTGAACCAGTCAGCAGGTGCCTTGGCCCAACATGTGACATTGCTGTTGGCAAGAGCCCTGATAATTTGCCTTGCTTCCCTGTCCTGATACATGCTTGCTCAGAGCCCTATACCAAACACAAAGCTCATAGACCCACGTACCTCCAGAGGAGCAGGACTGCAGGCTGGAGTGGTTCGCTTTCCCCTTTCGGTCTGTACAGTAGTGTTTGGCTAGGGGACAGGGGAGCTGAGATTATGTCTAGCTCAATAGGTAGGGTTGTTTTATTGTTTCCATTTCTCAGGGAGCCTAGATGGGTTTAAATTCTCTTGTTCTGCTATAACATTGCAAGCGATGAACCAGAATAAATACCACTGGCAGGTGTGCATTATAGGGCAAGCTGGATGGTTGTGCTGGAGTCCCAGCATTTTTTTCCAGCACAGGTTAATCTAGTACACTAGCAAAATACTAAAAAGCTGCTGCAGCTGAGAGCCCATAAGATGATTCTGCACACAAAGGCTCAAGACTGCAAAAGACGGCTCGCCCTTCCTACTCCTAAACGCTCCCACTTTGTGTCTACCCAAGGAGCTCCAGCTTGAGAGTAAGCTTGAGGAGGAATATCTCTCTCCAGCACAGACAGCCTTCTGCTTGATGAATCTGTTTCTCTTACAACAACAACAAATTGTGATGACTTAAAGAATACATTCTGCAAATAACAGCCAGGGAAGATTCTGGTGCAGAAAAGGAAACTGGCCCAACATGTGATATTGTAGGCTGGGTTGTTCGGTTGATACCTTGCAGAAATGAAGACAGATAGCAGGGCTATGAAGCACAAAGTCCCTACTGGGCTGCACCAGTCAGGTGCTCCCTGGAATACAGCTGCAGCAGGATACTGCCCCTTTTGTCCTGAACCACACTGGAGATCCAGACTGAGCTGGAAGTCCTCAAGCAGTGTTGCTGGCAACACGGAGACGTTGGAATTGAGAGGCTGAAGCGTGGCTACTAACCCTTGCTTTCTCCGTCTCTCTCATCGCTCCTTCTCCCCCACCCTCGCTAACAAGTGTGCTGAGTGTCTCCTGTGAGGGTTGTGCTAGATGGGGGAACAGAGGTGGACAAAGGACAAAAGAGCTGCATTGAAGGAGGCAGGGCTCTGAGGATGCAGGCAGGTGCAGAGGGCAGACATGAGGGGTGGGGTCTGACAGTGGCTAGCTTCTGAGACTCCAGGGGAAACTATGCTGTGCTGTGCTGTGCTGTGCTCTGCTGTGTGTTACCTTTGAATTGCAGTACTGTAGCGTGGCGAATGGTTGAGACCTCCCAGGTTATGAGGCAGGAGCAGGAGCTGGCGCTGGATGGAGGGCTGCCTTGACTCCTTTGTGTTTTCCCTGGTACCTAGAACGTCTTAAACAACCATTTAATGCTGGGTCTCTTGTGATTTTTCTCCCTCCCAAAG
Seq C2 exon
ACAAGCCAAACGGCTCCTGGGGCAGATCGTGGATCGATGTCGGAATGGGCCTGGCTTTCACAACGATATGGATGGCAACAGCACAATCCAGGAACTTCTTATCCCTGCATCTAAAGTGGGGCTGGTCATCGGCAAAGGAGGGGAAACGATCAAGCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843-Fubp3:NM_001033389:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(30.2=100)
A:
NA
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATTCCAGAGAGGCCCT
R:
CTGCAACTGCTTGATCGTTTCC
Band lengths:
214-2100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: