GgaEX1027677 @ galGal4
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
glycosyltransferase-like domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012939]
Coordinates
chr7:32626731-32631387:-
Coord C1 exon
chr7:32631243-32631387
Coord A exon
chr7:32628725-32628792
Coord C2 exon
chr7:32626731-32626801
Length
68 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTATGATTTAACTAGGAG
3' ss Score
6.51
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
Exon sequences
Seq C1 exon
ATATATTTGCAGAGGCCAAAAAGGCGTTGGGATCTTCTGTCTTGCACTGGGGGTACTTACCCAGCAAAGATGACTATTTCCAAGCCCTGTGCATGGCCGATGTTGTCATCTCAACAGCTAAACACGAATTCTTTGGAGTGGCAAT
Seq A exon
GAGCGCTTAAGGATTGAAACGAAGAAGCGTTGTGTGATTGTTGTGATGTGATACTTCTCAGGAGCAAG
Seq C2 exon
GGTGGAAGCGGTGCATTGTGGCTGTTACCCGTTGTGTCCCAAGGCCTTGGTGTACCCGGAGATCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424_MULTIEX1-3/7=1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.014
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(34.5=100)
A:
NO
C2:
PF0053415=Glycos_transf_1=FE(17.3=100)
Main Inclusion Isoform:
ENSGALT00000020306fB8091
Main Skipping Isoform:
ENSGALT00000020306fB2233
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTCTTGCACTGGGGGTA
R:
AGATCTCCGGGTACACCAAGG
Band lengths:
176-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]