GgaEX0018796 @ galGal4
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
glycosyltransferase-like domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012939]
Coordinates
chr7:32626731-32635235:-
Coord C1 exon
chr7:32635126-32635235
Coord A exon
chr7:32631243-32631387
Coord C2 exon
chr7:32626731-32626801
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCATTTTTAAAAGATA
3' ss Score
7.27
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGAACACGACAAAGATCCTGAAACTTTCTTTAAAGTGCTGCTGAAACTGAAGGAGCAGGAGCTACCTTTTCACGTGTCCGTCCTCGGGGAGACTTTCACTGATGTTCCAG
Seq A exon
ATATATTTGCAGAGGCCAAAAAGGCGTTGGGATCTTCTGTCTTGCACTGGGGGTACTTACCCAGCAAAGATGACTATTTCCAAGCCCTGTGCATGGCCGATGTTGTCATCTCAACAGCTAAACACGAATTCTTTGGAGTGGCAAT
Seq C2 exon
GGTGGAAGCGGTGCATTGTGGCTGTTACCCGTTGTGTCCCAAGGCCTTGGTGTACCCGGAGATCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424_MULTIEX1-1/7=C1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(26.6=100)
A:
PF0053415=Glycos_transf_1=FE(34.5=100)
C2:
PF0053415=Glycos_transf_1=FE(17.3=100)
Main Inclusion Isoform:
ENSGALT00000020306fB2233
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACGACAAAGATCCTGA
R:
GGAAGATCTCCGGGTACACCA
Band lengths:
178-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]