HsaEX0028910 @ hg19
Exon Skipping
Gene
ENSG00000121964 | GTDC1
Description
glycosyltransferase-like domain containing 1 [Source:HGNC Symbol;Acc:20887]
Coordinates
chr2:144710340-144728329:-
Coord C1 exon
chr2:144728220-144728329
Coord A exon
chr2:144714762-144714906
Coord C2 exon
chr2:144710340-144710410
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTTGTTTTTAAAAGATA
3' ss Score
7.63
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGAGCATGATAAAGATCCAGAAAGCTTTTTTAAGGTATTAATGCATCTTAAAGACTTAGGACTCAATTTCCACGTGTCTGTACTTGGAGAAACCTTCACAGATGTCCCAG
Seq A exon
ATATTTTTTCAGAGGCCAAAAAGGCATTGGGATCTTCTGTCTTACACTGGGGCTACTTACCCAGCAAAGATGACTATTTCCAAGTACTGTGCATGGCTGATGTTGTCATCTCAACAGCTAAGCATGAATTCTTTGGAGTGGCAAT
Seq C2 exon
GTTGGAAGCTGTGTACTGTGGGTGTTACCCACTTTGTCCTAAAGATTTGGTTTATCCCGAAATATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121964_MULTIEX1-16/17=15-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(24.2=100)
A:
PF0053415=Glycos_transf_1=FE(31.4=100)
C2:
PF0053415=Glycos_transf_1=FE(15.7=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCATGATAAAGATCCAGAAAGC
R:
CTGGAAATATTTCGGGATAAACCA
Band lengths:
181-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)