GgaEX0018796 @ galGal3
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
NA
Coordinates
chr7:34749433-34755028:-
Coord C1 exon
chr7:34754919-34755028
Coord A exon
chr7:34751036-34751180
Coord C2 exon
chr7:34749433-34749533
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCATTTTTAAAAGATA
3' ss Score
7.27
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGAACACGACAAAGATCCTGAAACTTTCTTTAAAGTGCTGCTGAAACTGAAGGAGCAGGAGCTACCTTTTCACGTGTCCGTCCTCGGGGAGACTTTCACTGATGTTCCAG
Seq A exon
ATATATTTGCAGAGGCCAAAAAGGCGTTGGGATCTTCTGTCTTGCACTGGGGGTACTTACCCAGCAAAGATGACTATTTCCAAGCCCTGTGCATGGCCGATGTTGTCATCTCAACAGCTAAACACGAATTCTTTGGAGTGGCAAT
Seq C2 exon
AACATCACCTTGGTGGGTGGTCATCATCTCTCCTTGCACTGAAGCTGTACCTTCTTGACACCACACTTGATGCTGGATGCCTGCCCAAACACCAAACTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424-'16-19,'16-18,18-19
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(26.6=100)
A:
PF0053415=Glycos_transf_1=FE(34.5=100)
C2:
PF136921=Glyco_trans_1_4=PD(3.0=15.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACGACAAAGATCCTGA
R:
GAAGTTTGGTGTTTGGGCAGG
Band lengths:
210-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]