BtaEX0016462 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001132 | GTDC1
Description
Bos taurus glycosyltransferase-like domain containing 1 (GTDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076035]
Coordinates
chr2:52868994-52891074:+
Coord C1 exon
chr2:52868994-52869103
Coord A exon
chr2:52886474-52886618
Coord C2 exon
chr2:52891004-52891074
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTCGTTTTTAAAAGATA
3' ss Score
7.88
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GGAGCATGATAAAGATCCAGAGAGTTTTTTTAAGGTATTGATGCATCTTAAGGACTTAGGACTCAATTTCCACGTATCTGTCCTTGGAGAAACCTTCACAGATGTCCCAG
Seq A exon
ATATATTTTCAGAATCCAGAAAGGCATTGGGATCTTCTGTGTTGCACTGGGGCTACTTACCCAGCAAAGATGACTATTTCCAAGTACTGTGCATGGCTGATGTTGTCATCTCAACAGCTAAGCATGAATTCTTTGGAGTGGCAAT
Seq C2 exon
GTTGGAAGCTGTGTATTGTGGGTGTTACCCACTTTGTCCCAAAGATTTGGTTTATCCTGAAATATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001132_MULTIEX2-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000001505fB3147
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCATGATAAAGATCCAGAGAGT
R:
TGGGACAAAGTGGGTAACACC
Band lengths:
151-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development