BtaEX0016461 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001132 | GTDC1
Description
Bos taurus glycosyltransferase-like domain containing 1 (GTDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076035]
Coordinates
chr2:52825435-52886618:+
Coord C1 exon
chr2:52825435-52825767
Coord A exon
chr2:52868994-52869103
Coord C2 exon
chr2:52886474-52886618
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTTTTTACTTCCAGGGA
3' ss Score
11.18
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ATTCATGCCCAAGCACAAAGCAGCCCATTTACAGAAGATACTCAGCCTTAAAGAAAATGGTGGCAATGCTCCATCCACGGCCCTTCCTTTCCAACAGCAGCTGAGAGGTTCTGAGAATTTATTGAAGAGTTTTGATTCAAAGTCTGGACCCTGTGATGCTGCACAACAAGAAAGCCTGGGTTGCTCAGTAAGACAGGCGTCATACTTGAAAACATTCAACTCCTCAGATGATTCAAGCACACATCATGGGGAACATAAACAAAATCGGTGTGACGTTTTGGCTGAAGCTGATGATCAGCAAAGACCATTACATATTGTCTGGCCTCACAGGTG
Seq A exon
GGAGCATGATAAAGATCCAGAGAGTTTTTTTAAGGTATTGATGCATCTTAAGGACTTAGGACTCAATTTCCACGTATCTGTCCTTGGAGAAACCTTCACAGATGTCCCAG
Seq C2 exon
ATATATTTTCAGAATCCAGAAAGGCATTGGGATCTTCTGTGTTGCACTGGGGCTACTTACCCAGCAAAGATGACTATTTCCAAGTACTGTGCATGGCTGATGTTGTCATCTCAACAGCTAAGCATGAATTCTTTGGAGTGGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001132_MULTIEX2-4/5=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000001505fB3147
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTGGACCCTGTGATGCT
R:
GGTAAGTAGCCCCAGTGCAAC
Band lengths:
255-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development