GgaEX1027675 @ galGal4
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
glycosyltransferase-like domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012939]
Coordinates
chr7:32626731-32652794:-
Coord C1 exon
chr7:32652426-32652794
Coord A exon
chr7:32635126-32635235
Coord C2 exon
chr7:32626731-32626801
Length
110 bp
Sequences
Splice sites
3' ss Seq
TAAGTTCTGTTTATTTCAAGGGA
3' ss Score
5.89
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTTCATGCCAGAACATAAGCTTGCCCATTTGGAAAACGTAATTGGTGTTAAAAGAAATGGAGATTTTTATCAACGTGAGGGCCTGCCTGGGCAGCAGAAGAGCAGAGCTTTGGGAGGTTTAATGAAAAACAGCAACGCGTGTCGTGAGTCTGGACTTTGTGAAACACAGCCTGGACTTTGTACCACACAGCATGAGGGACTGCATTCCCCATTAACAGCAGCAGGGAGATTGAACAAGTCTGAAGCATCAGAAAGTACAAATCCTTGTCAAGAAGAAGATAAGCAACATGTGACTTTTAACCTCTGTAATATCTGGAGTGGAATGGACTATCTGCAGAGACCTTTACATGTTGTCTGGCCTCACAGGTG
Seq A exon
GGAACACGACAAAGATCCTGAAACTTTCTTTAAAGTGCTGCTGAAACTGAAGGAGCAGGAGCTACCTTTTCACGTGTCCGTCCTCGGGGAGACTTTCACTGATGTTCCAG
Seq C2 exon
GGTGGAAGCGGTGCATTGTGGCTGTTACCCGTTGTGTCCCAAGGCCTTGGTGTACCCGGAGATCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424-'37-33,'37-26,46-33
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=PU(5.0=5.6)
A:
PF0053415=Glycos_transf_1=FE(26.6=100)
C2:
PF0053415=Glycos_transf_1=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCATGAGGGACTGCATT
R:
AGATCTCCGGGTACACCAAGG
Band lengths:
249-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]