RnoEX0040390 @ rn6
Exon Skipping
Gene
ENSRNOG00000031038 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:RGD Symbol;Acc:1563393]
Coordinates
chr3:29421369-29471277:-
Coord C1 exon
chr3:29470963-29471277
Coord A exon
chr3:29435484-29435593
Coord C2 exon
chr3:29421369-29421513
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTGTTTATTTCCAGGGA
3' ss Score
10.34
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
ATTCATGCCCAAGCACAAAATAGCCCACTTAAGGAGGATGCTCAGCCTTATTGGAAATGATGCTGCAGCGCTGTCTGTGACGCTTCCTCCCCAACCAGAGCAGAGGCTTTCTAAGAAGTCACTGGAGAATTTTGAATCAAAGTCTGATGAACACCCTGGCCTTGATACTGAACAAGAAACCCTGGACACCCCAACAATCCTCAAATCAGTCTCCCTTCCTGTGAGCGAAGAAAACCCGGCTCTTGGTCACAGCACCTTTTTGTGTGGAGCTGAAGATCAGCAGAGACCGCTGCACATTACATGGCCGCACAGGTG
Seq A exon
GGAGCATGACAAAGATCCAGAGACGTTTTTAAAGGTCTTAATGCATCTAAAAGAGTTAAGGCTCAATTTCTACGTCTCTGTCCTTGGAGAGACTTTTACAGATGTACCAG
Seq C2 exon
ATATATTTTCAGAAGCCAAAAAGGCACTGGGCTCTTCAGTCTTGCACTGGGGCTACTTACCCAGTAAAGAAGACTATTTCCGAGTACTGTGCACGGCTGATGTTGTCATCTCAACAGCCAAGCATGAATTCTTTGGAGTAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031038_MULTIEX2-15/15=14-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.329 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=PU(7.8=11.3)
A:
PF0053415=Glycos_transf_1=FE(24.2=100)
C2:
PF0053415=Glycos_transf_1=FE(31.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAACCCTGGACACCCCAA
R:
CAACATCAGCCGTGCACAGTA
Band lengths:
247-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]