GgaEX1027675 @ galGal3
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
NA
Coordinates
chr7:34751036-34772587:-
Coord C1 exon
chr7:34772219-34772587
Coord A exon
chr7:34754919-34755028
Coord C2 exon
chr7:34751036-34751180
Length
110 bp
Sequences
Splice sites
3' ss Seq
TAAGTTCTGTTTATTTCAAGGGA
3' ss Score
5.89
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTTCATGCCAGAACATAAGCTTGCCCATTTGGAAAACGTAATTGGTGTTAAAAGAAATGGAGATTTTTATCAACGTGAGGGCCTGCCTGGGCAGCAGAAGAGCAGAGCTTTGGGAGGTTTAATGAAAAACAGCAACGCGTGTCGTGAGTCTGGACTTTGTGAAACACAGCCTGGACTTTGTACCACACAGCATGAGGGACTGCATTCCCCATTAACAGCAGCAGGGAGATTGAACAAGTCTGAAGCATCAGAAAGTACAAATCCTTGTCAAGAAGAAGATAAGCAACATGTGACTTTTAACCTCTGTAATATCTGGAGTGGAATGGACTATCTGCAGAGACCTTTACATGTTGTCTGGCCTCACAGGTG
Seq A exon
GGAACACGACAAAGATCCTGAAACTTTCTTTAAAGTGCTGCTGAAACTGAAGGAGCAGGAGCTACCTTTTCACGTGTCCGTCCTCGGGGAGACTTTCACTGATGTTCCAG
Seq C2 exon
ATATATTTGCAGAGGCCAAAAAGGCGTTGGGATCTTCTGTCTTGCACTGGGGGTACTTACCCAGCAAAGATGACTATTTCCAAGCCCTGTGCATGGCCGATGTTGTCATCTCAACAGCTAAACACGAATTCTTTGGAGTGGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424-'15-18,'15-16,16-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=PU(5.0=5.6)
A:
PF0053415=Glycos_transf_1=FE(26.6=100)
C2:
PF0053415=Glycos_transf_1=FE(34.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCACACAGCATGAGGGA
R:
TACCCCCAGTGCAAGACAGAA
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]