DreEX0036499 @ danRer10
Exon Skipping
Gene
ENSDARG00000020642 | gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050417-8]
Coordinates
chr9:26079265-26097808:+
Coord C1 exon
chr9:26079265-26079429
Coord A exon
chr9:26089613-26089722
Coord C2 exon
chr9:26097738-26097808
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTTTCTGGCTCAAGGGA
3' ss Score
6.12
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
CAGTTACCCAGACGTCGAGCCACCTGAAAAGATGCTCAATGTGGCTGGAACAAATCAGTCCCATGAGCCCACCAGTGTCACACCACATCAGGAAACAGCGTCCCCTTTGTGTGGTCACGAGGGAGAGAAACTGCGGCCACTGCACATCGTCTGGCCACATCGCTG
Seq A exon
GGAACATGACAAAGACCCACAGCTGTTCTTCCAGACCTTACTGAAACTCAAAGACCGACAGCTGAGCTTTGAAGTTTCTGTCCTGGGAGAGACCTTCACTGACGTTCCAG
Seq C2 exon
GTTAGAAGCAGTGCATTGTGGATGTTACCCCCTGTGTCCGAAGGCTTTGGTCTACCCTGAAATATTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020642_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.695 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=PU(10.3=28.6)
A:
PF0053415=Glycos_transf_1=FE(23.9=100)
C2:
PF0053415=Glycos_transf_1=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTACCCAGACGTCGAGC
R:
CAGGGAATATTTCAGGGTAGACCA
Band lengths:
236-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]