GgaEX1028769 @ galGal4
Exon Skipping
Gene
ENSGALG00000027287 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr13:9651454-9652060:+
Coord C1 exon
chr13:9651454-9651549
Coord A exon
chr13:9651671-9651770
Coord C2 exon
chr13:9651877-9652060
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCCCCATCTCCTGTTGGCAGCAC
3' ss Score
6.34
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GCTGTGCTGCTGACCTGGACCAAAGGCTTCAACGCCTCCGGCTGCGTAGGGCAGGACGTGGTTCAGATGCTGCGGGAGGCTGCGCAGCGCAAACAG
Seq A exon
CACACAACGCTGAAGGTGGTGGCTGTGGTGAACGACACCGTGGGGACCATGATGGCCTGTGGCTACCATGACCCCAAGTGTGAAATTGGCCTCATTGTGG
Seq C2 exon
GGACGGGGACCAACGCCTGCTACATGGAGGAGAGGGCAAACGTGGGCACCGTGGAGGGAGACGAGGGCCGCATGTGCATCAACATGGAGTGGGGTGCTTTTGGGGACAACGGCTGCCTGGACGGCTTCTTCACCAGCTTTGACCAGCTGGTGGATGAGAAAACCATCAACGCGGGCAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027287-'17-21,'17-18,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.3=100)
A:
PF0034916=Hexokinase_1=PD(11.3=67.6),PF0372711=Hexokinase_2=PU(3.2=23.5)
C2:
PF0372711=Hexokinase_2=FE(24.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGACCAAAGGCTTCAACG
R:
CCCGCGTTGATGGTTTTCTCA
Band lengths:
258-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]