RnoEX0042021 @ rn6
Exon Skipping
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10149821-10151920:+
Coord C1 exon
chr17:10149821-10149916
Coord A exon
chr17:10150095-10150194
Coord C2 exon
chr17:10151737-10151920
Length
100 bp
Sequences
Splice sites
3' ss Seq
CAGCATCCGTTTGCATGCAGGCA
3' ss Score
5.13
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GGCATCCTCCTCAACTGGACTAAGGGGTTCAATGCATCAGGCTGCGAGGGCCAAGATGTTGTGTATTTATTACGGGAAGCCATTAGGCGCAGACAG
Seq A exon
GCAGTGGAGCTGAATGTGGTTGCCATTGTCAATGACACGGTGGGGACCATGATGTCCTGTGGCTATGATGATCCCTGTTGTGAGATGGGCCTCATTGTCG
Seq C2 exon
GAACCGGTACCAACGCCTGCTATATGGAAGAACTCCGGAATGTGGCGAGTGTGCCCGGGGACTCGGGCCACATGTGTATCAACATGGAGTGGGGTGCCTTTGGGGATGACGGCTCACTGAGCATGCTCGGCACCTGCTTTGATGCTAGCGTGGACCAGGCATCCATCAACCCAGGCAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235-'19-21,'19-20,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.5=100)
A:
PF0034916=Hexokinase_1=PD(11.5=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGGTTCAATGCATCAGGC
R:
CTGTTTGCCTGGGTTGATGGA
Band lengths:
257-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]