GgaEX1028754 @ galGal3
Exon Skipping
Gene
ENSGALG00000004222 | F1NEI1_CHICK
Description
NA
Coordinates
chr6:11998823-12001076:+
Coord C1 exon
chr6:11998823-11998918
Coord A exon
chr6:11999805-11999904
Coord C2 exon
chr6:12000893-12001076
Length
100 bp
Sequences
Splice sites
3' ss Seq
TACGTTTTTCTTTTCCCAAGGAG
3' ss Score
7.58
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GGTATCCTTCTCAACTGGACAAAAGGTTTCAAAGCTACAGACTGTGAGGGTGAAGACGTGGTGTATTTGCTAAGAGAAGGAATTAAAAGAAGAGAG
Seq A exon
GAGTTTGACTTGGATGTGGTAGCTGTAGTGAACGATACGGTGGGCACGATGATGACTTGTGCTTATGAAGACCCAAACTGTGAAATTGGACTCATTGTGG
Seq C2 exon
GAACTGGCAGCAATGCCTGTTACATGGAGGAGATGAGAAACATAGAGATGGTGGATGGTGAGCAAGGACGGATGTGTGTGAACATGGAGTGGGGAGCTTTCGGGGATAATGGATGCCTGGACGATATCAGGACAATATATGACAAAGCAGTTGATGACTATTCACTAAATGCTGGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACAGACTGTGAGGGTGA
R:
GCTTTCCAGCATTTAGTGAATAGTCA
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]