BtaEX0017179 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012380 | HK1
Description
Bos taurus hexokinase 1 (HK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001012668]
Coordinates
chr28:25909890-25916947:+
Coord C1 exon
chr28:25909890-25909985
Coord A exon
chr28:25911789-25911888
Coord C2 exon
chr28:25916764-25916947
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCTTTCTTTCCAAAGGAA
3' ss Score
10.25
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGTATCTTAATCACCTGGACCAAAGGTTTTAAGGCAACCGACTGCGTGGGGCATGATGTAGCAACCTTACTGAGGGAGGCGATAAAAAGGAGAGAG
Seq A exon
GAATTTGACCTGGATGTGGTGGCTGTGGTCAACGACACGGTGGGCACCATGATGACCTGTGCTTATGAGGAGCCCACCTGCGAGGTTGGACTCATCGTAG
Seq C2 exon
GGACTGGCAGCAATGCCTGCTACATGGAGGAAATGAAAAACGTCGAGACGCTAGAAGGAAACCAGGGACAAATGTGTATCAACATGGAGTGGGGTGCCTTTGGGGACAACGGGTGTCTGGATGATATCAGAACAATCTATGACAAACTGGTGGATGAGTTTTCTCTAAACTCTGGGAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012380_MULTIEX1-9/9=8-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.0=100)
A:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAAGGCAACCGACTGCGT
R:
CTTTGCTTCCCAGAGTTTAGAGA
Band lengths:
254-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development