RnoEX0042003 @ rn6
Exon Skipping
Gene
ENSRNOG00000046891 | Hk1
Description
hexokinase 1 [Source:RGD Symbol;Acc:2796]
Coordinates
chr20:31917792-31923722:-
Coord C1 exon
chr20:31923627-31923722
Coord A exon
chr20:31922876-31922975
Coord C2 exon
chr20:31917792-31917975
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCTTTCTTTTCAAAGGAA
3' ss Score
9.32
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GGAATCTTGATCTCATGGACAAAGGGTTTCAAAGCCACTGACTGTGAGGGCCATGATGTAGCCTCCTTACTGAGGGATGCGGTGAAGAGGAGAGAG
Seq A exon
GAATTTGACTTGGATGTGGTGGCTGTGGTCAACGACACCGTGGGCACCATGATGACCTGTGCGTATGAAGAACCCACTTGCGAAATTGGACTCATCGTGG
Seq C2 exon
GGACGGGCACCAATGCCTGCTACATGGAGGAGATGAAGAATGTGGAGATGGTGGAGGGGAACCAGGGCCAGATGTGCATCAACATGGAGTGGGGCGCCTTCGGTGACAATGGGTGTCTGGATGACATCAGAACAGACTTTGACAAAGTGGTGGACGAATATTCTCTAAACTCTGGGAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046891-'33-34,'33-32,36-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(15.1=100)
A:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(11.3=23.5)
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGGACAAAGGGTTTCAAAGC
R:
TCGTCCACCACTTTGTCAAAG
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]