GgaEX1031295 @ galGal4
Exon Skipping
Gene
ENSGALG00000011858 | KCNH5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BXK7]
Coordinates
chr5:53505222-53516987:+
Coord C1 exon
chr5:53505222-53505421
Coord A exon
chr5:53507106-53507250
Coord C2 exon
chr5:53516735-53516987
Length
145 bp
Sequences
Splice sites
3' ss Seq
ACAATTTTCCCTTGGTAAAGACT
3' ss Score
0.91
5' ss Seq
AACGTAAGA
5' ss Score
7.69
Exon sequences
Seq C1 exon
CTCTTCTTTATGCAACTATTTTTGGAAATGTCACCACTATTTTCCAGCAGATGTATGCCAACACCAACCGATACCATGAAATGCTGAACAATGTGAGAGATTTCCTAAAATTATATCAAGTCCCAAAAGGCCTTAGTGAAAGAGTCATGGATTATATTGTCTCAACCTGGTCCATGTCGAAAGGAATTGACACAGAGAAG
Seq A exon
ACTTGCCTAAACTTAGGCCTGGATCCAAAACCTATTTATAACAGTGGAAGGATTTCAGGAACCTCTGCATCTGGACATCAGTATTTGGATCTAATCGAACTTCCCAGAAAAGCCAGTGTTGCAGAAGAACAGAGACGAGATAAAC
Seq C2 exon
GTTCTCTCGATTTGCCCAAAGGACATGAGAGCAGATATTTGTGTGCACCTAAACCGAAAAGTTTTTAATGAGCACCCTGCCTTCCGGCTGGCCAGCGATGGCTGCCTGCGAGCCCTGGCCGTGGAGTTTCAGACGATCCATTGCGCCCCGGGGGACCTCATCTATCACGCTGGGGAGAGTGTTGATGCTCTTTGCTTTGTGGTCTCAGGATCCCTAGAAGTCATCCAGGACGACGAGGTGGTGGCTATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011858_MULTIEX1-2/5=1-5
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.184 C2=0.021
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.5=14.9)
A:
NO
C2:
PF078836=Cupin_2=PU(65.1=48.2),PF0002724=cNMP_binding=PU(45.5=47.1)
Main Inclusion Isoform:
ENSGALT00000019345fB8615
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGTCCATGTCGAAAGGA
R:
GGGATCCTGAGACCACAAAGC
Band lengths:
250-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]