GgaEX1033676 @ galGal4
Exon Skipping
Gene
ENSGALG00000013254 | LOXL3
Description
lysyl oxidase-like 3 [Source:HGNC Symbol;Acc:HGNC:13869]
Coordinates
JH375171.1:148294-150086:+
Coord C1 exon
JH375171.1:148294-148398
Coord A exon
JH375171.1:149438-149529
Coord C2 exon
JH375171.1:149906-150086
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCTGGGTTGGGCTCTTCCAGGGA
3' ss Score
4.92
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCACTGCTGCCAGTGGGGAACAGCTGTGACCTCTTTTGCCACCCACCTCCGCTCTTCCCATCCCGACAGTTGTACCTCCTGCACCCACTGCTGCCCCAGGACAAG
Seq A exon
GGAAAGTTGTACCAAATGTGCCGGGAGGGTCTGGACGGTGACCCCAGCACTGCAGAGGTCCTCGCAGCCCACCCCAACCTACTGGGTGACAG
Seq C2 exon
GGTGCTGGGCAGCTTCCTGAGCCTCAGCCCTGAGTACACCTTTGTGCTGGAGGATGCGGGCGGCCCCTGTGGCTATGCAGCTGGAGCACTCTGTGCTGAACGATTCCTGCAAGAGCGCGACAGCAGCTGGCTTCCTGCCATGCAGCGCAGGTACCCCCGGGAGCTGGGGGTCCTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013254_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000021647fB8996
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTGACCTCTTTTGCCA
R:
CAGAGTGCTCCAGCTGCATAG
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]