GgaEX1033677 @ galGal4
Exon Skipping
Gene
ENSGALG00000013254 | LOXL3
Description
lysyl oxidase-like 3 [Source:HGNC Symbol;Acc:HGNC:13869]
Coordinates
JH375171.1:149438-150330:+
Coord C1 exon
JH375171.1:149438-149529
Coord A exon
JH375171.1:149906-150086
Coord C2 exon
JH375171.1:150159-150330
Length
181 bp
Sequences
Splice sites
3' ss Seq
TGCCCTGCTCTGTCTGGCAGGGT
3' ss Score
10.03
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGAAAGTTGTACCAAATGTGCCGGGAGGGTCTGGACGGTGACCCCAGCACTGCAGAGGTCCTCGCAGCCCACCCCAACCTACTGGGTGACAG
Seq A exon
GGTGCTGGGCAGCTTCCTGAGCCTCAGCCCTGAGTACACCTTTGTGCTGGAGGATGCGGGCGGCCCCTGTGGCTATGCAGCTGGAGCACTCTGTGCTGAACGATTCCTGCAAGAGCGCGACAGCAGCTGGCTTCCTGCCATGCAGCGCAGGTACCCCCGGGAGCTGGGGGTCCTGGGACAG
Seq C2 exon
GGTGTTCTGGAAGAAGCACTGCTCTTCTTCCACACAAAGCCGCTGCCCGTGCCGCTGCCCGTGCTGCGACGCTTCCCCTCCCTGGTGCAGCTGGACATGGCCCCGCGAGTGCAGGACATGGGTGCTGGCTGCAGTCTGGCTGTCAGCCTGCTGAGTGCCCTCAGAACCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013254_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000021647fB8996
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTACCAAATGTGCCGGGAG
R:
CGTTGGTTCTGAGGGCACTC
Band lengths:
258-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]