GgaEX1033882 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31472530-31476080:-
Coord C1 exon
chr7:31475956-31476080
Coord A exon
chr7:31474489-31474556
Coord C2 exon
chr7:31472530-31472901
Length
68 bp
Sequences
Splice sites
3' ss Seq
CATTTTTCAAATTTTACTAGGGT
3' ss Score
7.18
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
AGCACATGCAAATGGCTCTATTAGAAGAGGCCACAAGAATGAGGCCACGGATGCTGTGACCATGAGGACTGGCCTTGGAATAAACCTGAAGGAAGTGAAAGTCTTTAATAGAGCACGAGAGAAAG
Seq A exon
GGTACAAATGGTTAATGTCTTTGGGAGGGGCTGTCAGTGAGCCAGGAGGACAAAAGGGAAAAAAACAG
Seq C2 exon
GTACTAATGTTTGTGCCAAGAATAATGGTGGATGTCATCAACTCTGTCTTTATCGAGGAAAAGCACAAAGAACTTGTGCATGTGCACATGGCTATCTTGCAGAAGATGGAATTACCTGCCTAAGACATGAAGGTTACCTCTTATATTCAGGAAGGACAATATTAAAAAGTATACATCTTTCAGATGAAAACAACTTAAATTCACCAGTAAGGCCATATGAAAATCCAGAGTACTTCAAAAATGTGATCGCTCTTGCTTTTGACTACAGCCTGAAAGGAAGAGGTACTAATCGGATATTTTTCAGTGATGCACACTTTGGAAATATACAAGTTATTAAAGACAACTGGGCTGGCAGAAGAGTGCTAATAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'55-78,'55-77,56-78
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=28.8)
Main Inclusion Isoform:
ENSGALT00000020272fB9035
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCTGTGACCATGAGGAC
R:
TGCAAGATAGCCATGTGCACA
Band lengths:
178-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]