GgaEX1033890 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31472530-31476521:-
Coord C1 exon
chr7:31476370-31476521
Coord A exon
chr7:31475956-31476080
Coord C2 exon
chr7:31472530-31472901
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATCTTCAACTTTTTTGGCAGAGC
3' ss Score
6.09
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
Exon sequences
Seq C1 exon
GAAAATAAATTATATTGGTGTGATGCTCGTACCGACAAGATAGAAAGAATTGACCTTGAGAGTGGAGGGAATCGGGAGATTGTGCTGTCAGGGAGCAATGTGGATATGTTTTCAGTTGCGGTGTTTGGAGCTTACATCTACTGGTCTGACAG
Seq A exon
AGCACATGCAAATGGCTCTATTAGAAGAGGCCACAAGAATGAGGCCACGGATGCTGTGACCATGAGGACTGGCCTTGGAATAAACCTGAAGGAAGTGAAAGTCTTTAATAGAGCACGAGAGAAAG
Seq C2 exon
GTACTAATGTTTGTGCCAAGAATAATGGTGGATGTCATCAACTCTGTCTTTATCGAGGAAAAGCACAAAGAACTTGTGCATGTGCACATGGCTATCTTGCAGAAGATGGAATTACCTGCCTAAGACATGAAGGTTACCTCTTATATTCAGGAAGGACAATATTAAAAAGTATACATCTTTCAGATGAAAACAACTTAAATTCACCAGTAAGGCCATATGAAAATCCAGAGTACTTCAAAAATGTGATCGCTCTTGCTTTTGACTACAGCCTGAAAGGAAGAGGTACTAATCGGATATTTTTCAGTGATGCACACTTTGGAAATATACAAGTTATTAAAGACAACTGGGCTGGCAGAAGAGTGCTAATAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407_MULTIEX4-2/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.023
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=76.5)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=28.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGTGTGATGCTCGTACCG
R:
TCTGCAAGATAGCCATGTGCA
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]