GgaEX1033890 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33587910-33591901:-
Coord C1 exon
chr7:33591750-33591901
Coord A exon
chr7:33591336-33591460
Coord C2 exon
chr7:33587910-33588281
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATCTTCAACTTTTTTGGCAGAGC
3' ss Score
6.09
5' ss Seq
AAGGTTGGC
5' ss Score
6.1
Exon sequences
Seq C1 exon
GAAAATAAATTATATTGGTGTGATGCTCGTACCGACAAGATAGAAAGAATTGACCTTGAGAGTGGAGGGAATCGGGAGATTGTGCTGTCAGGGAGCAATGTGGATATGTTTTCAGTTGCGGTGTTTGGAGCTTACATCTACTGGTCTGACAG
Seq A exon
AGCACATGCAAATGGCTCTATTAGAAGAGGCCACAAGAATGAGGCCACGGATGCTGTGACCATGAGGACTGGCCTTGGAATAAACCTGAAGGAAGTGAAAGTCTTTAATAGAGCACGAGAGAAAG
Seq C2 exon
GTACTAATGTTTGTGCCAAGAATAATGGTGGATGTCATCAACTCTGTCTTTATCGAGGAAAAGCACAAAGAACTTGTGCATGTGCACATGGCTATCTTGCAGAAGATGGAATTACCTGCCTAAGACATGAAGGTTACCTCTTATATTCAGGAAGGACAATATTAAAAAGTATACATCTTTCAGATGAAAACAACTTAAATTCACCAGTAAGGCCATATGAAAATCCAGAGTACTTCAAAAATGTGATCGCTCTTGCTTTTGACTACAGCCTGAAAGGAAGAGGTACTAATCGGATATTTTTCAGTGATGCACACTTTGGAAATATACAAGTTATTAAAGACAACTGGGCTGGCAGAAGAGTGCTAATAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'59-70,'59-65,60-70=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.024
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=76.5)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=28.8)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGTGTGATGCTCGTACCG
R:
TCTGCAAGATAGCCATGTGCA
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]