DreEX6037434 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36729752-36730827:+
Coord C1 exon
chr9:36729752-36729903
Coord A exon
chr9:36730210-36730334
Coord C2 exon
chr9:36730456-36730827
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCATACCTTTCCTCTGGCAGAGC
3' ss Score
7.98
5' ss Seq
AAGGTTGAG
5' ss Score
1.33
Exon sequences
Seq C1 exon
GAAAATAGATTATACTGGTGCGACGCCCGGACCGACAAGATAGAAAGGATCAACCTTGAAACCGGGGAGGGCCGAGAGATTGTACTGTCAGCCGCCAATGTGGACCTGTTCTCTGTGGCTGTGTTCGGGGCTTACATCTACTGGTCTGACAG
Seq A exon
AGCTCATGCCAATGGATCAATCCGCCGTGGATTCAAGAGCGATGCCACCGATGCTGTCACCATGAGAAGCGGCCTTGGCGTCAACCTGAAGGATGTGAAAGTGTTTAACAAAGGCCGGGAGAAAG
Seq C2 exon
GCACCAACCCATGTGCGAGAAGTAATGGAGGTTGTCAGCAGTTGTGTTTTCACTTGGGCAGCGGACGGAGGACCTGTTCTTGCGCTCATGGCTATTTGGCCGAAGATGGCTTTGCTTGCCAAAGATATGGAGGCTATCTTCTGTACTCTGAAAGGACTATATTGAAAAGCATCCATCTATCTGACGAGAGCGATCTCAACTCCCCATTACAACCTTTCGAGAATCCGGACTACTTTAAGAATGTCATTGCTCTAGCGTTTGATTATCGGCAAGAGAGTTCACCGCACAATCGCATATTCTTCAGCGACATCCATTTTGGGAATATTCAGATGATCAATGATGATTGGTCTGGAAGACAAGTCATAGTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'37-39,'37-38,38-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=78.8)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=29.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTTCTCTGTGGCTGTG
R:
TGGGGAGTTGAGATCGCTCTC
Band lengths:
256-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]