GgaEX1034346 @ galGal4
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30555772-30572903:-
Coord C1 exon
chr3:30572801-30572903
Coord A exon
chr3:30568754-30568825
Coord C2 exon
chr3:30555772-30555894
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTAACAATTTTTTTGTTCAGCTT
3' ss Score
6.7
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TGTGGCAAAGCACTTCCTGGCCTTTCTAAGCAAGAAGACTGCTGTGGAACCGTGGGTACTTCCTGGGGTTTTAACAAATGCCAGAAATGTCCCAAGAAGCCAT
Seq A exon
CTTACCATGGATACAGTCCTATGACAGAATGCCCACAAGGCTACAAGAGGATCAATGCTACGTTTTGTCAAG
Seq C2 exon
ATATCAATGAATGTCAGTTACAGGGAGTGTGCCCTAATGGTGAGTGTTTGAATACCATGGGCAGCTACAGATGTACCTGCAAAATGGGATTTGTGCCAGATCCTACCCTTTCAAGATGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'20-24,'20-21,21-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=FE(77.3=100)
A:
PF0068312=TB=PD(15.9=28.0),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCACTTCCTGGCCTTTCT
R:
ACATCTGTAGCTGCCCATGGT
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]