GgaEX1034364 @ galGal3
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
NA
Coordinates
chr5:40350021-40351571:-
Coord C1 exon
chr5:40351443-40351571
Coord A exon
chr5:40351025-40351144
Coord C2 exon
chr5:40350021-40350140
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTTCTCTGTCACCAGATC
3' ss Score
10.68
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
ATGAAGATGAGTGTCTGCAAGATCCTTGCACTGGAAAAGGTCACTGTGTCAACAGCGTGGGCTCCTATTCATGCCTCTGCTACTCTGGGTACACTCTGGTTTTCTTGGAGAGCAAGCAGACCTGTCAGG
Seq A exon
ATCGAGATGAATGTGAGCAGCCTTCTACATGTCCGGGACAACGATGTGTCAACACCCCCGGCTCCTACCGTTGCGAGTGCAAGGAGGGCTTTGCCATGGGCCTCCGAGGACAATGTGAAG
Seq C2 exon
ATATCAATGAGTGCGTGGATCCCAGCCCTTGTCCCCATGGGAAGTGTGTCAATACCCCGGGCTCCTACAGGTGTGTCGGCTGTGCGGACGGCTATCAGCCCAGGAACGGAAGATGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258-'18-23,'18-22,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.1),PF062476=Plasmod_Pvs28=PU(18.7=82.9),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=FE(22.0=100),PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAGTGTCTGCAAGATCCT
R:
GATGCATCTTCCGTTCCTGGG
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]