GgaEX1035768 @ galGal3
Exon Skipping
Gene
ENSGALG00000001978 | MED16
Description
NA
Coordinates
chr28:2328710-2330602:-
Coord C1 exon
chr28:2330495-2330602
Coord A exon
chr28:2329813-2329982
Coord C2 exon
chr28:2328710-2329141
Length
170 bp
Sequences
Splice sites
3' ss Seq
ACAGGGCTGTGTCTCTGCAGGCT
3' ss Score
8.51
5' ss Seq
AAGGTTCGT
5' ss Score
8.44
Exon sequences
Seq C1 exon
ATCTCACCCACATGGTTCACATCATCGACACGGAACACCCGTGGGACGTCTACTCCGTGAACTCCGGCCACGTGGAAGCCATCACCTGCCTGGAGTGGGATCAGTCGG
Seq A exon
GCTCCAGGCTGCTCTCAGCGGATGCAGACGGCCACATCAAGTGCTGGAGCATGACCGACCACCTGGCCAACAGCTGGGAGAACACCATGGGCAGCATGGTGGAGGGAGACCCCGTGGTGGCCCTGTCCTGGCTGCACAACGGTGTGAAGCTGGCACTGCATGTGGAGAAG
Seq C2 exon
TCTGGAGCATCGAACTTCGGGGAGAAGTTTTCCAGGGTCAAATTCTCTCCGTCGCTGACTCTGTTTGGTGGGAAGCCGATGGAGGGCTGGATTGCTGTGACCATCAGTGGTCTGGTGACAGTCTCCCTCCTCAAGCCCAACGGGCAGGTGCTGACATCCACGGAAAGCCTTTGCCGCCTCCGTTGCCGCGTTGCCTTGGCAGACGTCGCCTTCACTGGTGGGGGAAACATCGTGGTGGCCACTTCGGATGGCAGCAGTGCCTCCCCTGTCCAGTTCTACAAAGTCTGTGTGAGCGTGGTGAATGAGAAGTGCAAGATAGACACTGAAATCTTACCTTCCCTCTTCATGCGCTGCACCACCGACCCTGCCCGCAAGGACAAATACCCAGCAATCACTCACCTGAAATTCCTTGCTCGGGATATGTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001978-'2-2,'2-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(56.4=59.5)
A:
PF0040027=WD40=PD(41.0=28.1),PF116353=Med16=PU(4.2=52.6)
C2:
PF116353=Med16=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCATCGACACGGAACACC
R:
CTTTCCGTGGATGTCAGCACC
Band lengths:
257-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]