MmuEX6049647 @ mm10
Exon Skipping
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79902997-79907146:-
Coord C1 exon
chr10:79907039-79907146
Coord A exon
chr10:79906765-79906934
Coord C2 exon
chr10:79902997-79903428
Length
170 bp
Sequences
Splice sites
3' ss Seq
ACACAGCTCTCTGGTCGCAGGGT
3' ss Score
5.47
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATCTGACACACATGATCCATATCCTAGACACGGAACACCCCTGGGAAGTGCACTCTGTCAGCTCTGGCCACAGCGAGGCCATCACCTGCCTGGAGTGGGACCAGTCAG
Seq A exon
GGTCCCGGCTACTGTCTGCTGATGCTGATGGACAGATCAAATGCTGGAGCATGGCTGACCACCTGGCCAACAGCTGGGAGAGCTCGGTGGGCAGCCAGGTGGAGGGGGACCCCATCGTGGCCCTGTCCTGGCTGCACAACGGTGTAAAGCTGGCCCTGCATGTGGAGAAG
Seq C2 exon
TCTGGTGCCTCTAGCTTCGGAGAGAAGTTCTCACGTGTGAAGTTCTCCCCGTCCCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATTGCAGTGACAGTCAGTGGCCTGGTCACTGTGTCCCTTCTGAAGCCCAGCGGGCAGGTGCTGACGTCCACGGAGAGCCTGTGCCGGCTGCGTGGTAGAGTGGCGCTGGCTGACATCGCCTTCACGGGCGGTGGGAACATTGTGGTGGCTGCTGCAGATGGCAGCAGCGCGTCACCCGTGAAGTTCTATAAGGTGTGCGTCAGCGTGGTCAGCGAGAAGTGCCGCATCGACACGGAGATCCTGCCCTCACTGTTTATGCGCTGCACCACCGACCCCAACCGCAAAGACAGGTTCCCCGCCATCACACACCTCAAGTTCCTGGCGCGAGACATGTCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833-'5-6,'5-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(56.4=59.5)
A:
PF0040027=WD40=PD(41.0=28.1),PF116353=Med16=PU(11.6=52.6)
C2:
PF116353=Med16=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTAGACACGGAACACCCC
R:
CTCTCCGTGGACGTCAGCA
Band lengths:
255-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types