GgaEX1035770 @ galGal3
Exon Skipping
Gene
ENSGALG00000001978 | MED16
Description
NA
Coordinates
chr28:2326952-2329141:-
Coord C1 exon
chr28:2328710-2329141
Coord A exon
chr28:2327713-2327818
Coord C2 exon
chr28:2326952-2327107
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGTGGCTTTCCCCACTGCAGGTG
3' ss Score
10.98
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TCTGGAGCATCGAACTTCGGGGAGAAGTTTTCCAGGGTCAAATTCTCTCCGTCGCTGACTCTGTTTGGTGGGAAGCCGATGGAGGGCTGGATTGCTGTGACCATCAGTGGTCTGGTGACAGTCTCCCTCCTCAAGCCCAACGGGCAGGTGCTGACATCCACGGAAAGCCTTTGCCGCCTCCGTTGCCGCGTTGCCTTGGCAGACGTCGCCTTCACTGGTGGGGGAAACATCGTGGTGGCCACTTCGGATGGCAGCAGTGCCTCCCCTGTCCAGTTCTACAAAGTCTGTGTGAGCGTGGTGAATGAGAAGTGCAAGATAGACACTGAAATCTTACCTTCCCTCTTCATGCGCTGCACCACCGACCCTGCCCGCAAGGACAAATACCCAGCAATCACTCACCTGAAATTCCTTGCTCGGGATATGTCAGAACAG
Seq A exon
GTGTTGCTTTGTGCTTCCAACCAGAACAACAGCATTGTGGAGTGCTGGTCTCTGCGGAAAGAGGGCTTACCTGTCAACAACATCTTCCAGCAAATCTCTCCTGTGG
Seq C2 exon
TTGGAGACAAGCAGCCCATGATCCTGAAATGGCGAATTCTTTCTGCCACCAATGACTTGGATCGTGTCTCAGCTGTGGCTCTGCCCAAGCTGCCCATCTCCCTCACAAATACTGACCTGAAGGTGGCAAACGACACCAAATTCTTCCCTGGACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001978-'5-7,'5-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(19.9=100)
A:
PF116353=Med16=FE(4.9=100)
C2:
PF116353=Med16=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTTCCCTCTTCATGCGCT
R:
ATTTGGTGTCGTTTGCCACCT
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]