GgaEX1035946 @ galGal4
Exon Skipping
Gene
ENSGALG00000003334 | METTL11B
Description
methyltransferase like 11B [Source:HGNC Symbol;Acc:HGNC:31932]
Coordinates
chr8:4957255-4964307:-
Coord C1 exon
chr8:4964154-4964307
Coord A exon
chr8:4960163-4960392
Coord C2 exon
chr8:4957255-4957430
Length
230 bp
Sequences
Splice sites
3' ss Seq
TATTTCATTTCCTGATGCAGGAG
3' ss Score
7.42
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATGGCATACAAAGCAGCACATCTGGCTTTTAAGTCGCGCTGGCACAAGACAGACGAAGAACTGTGTCGCCACAGCATGTCATTTGACTTACATAAGGCGATCCAGAATGACTTCTTTCAGTGTTACCTTTATCTGCTGGAAACGCTTCCCCTGG
Seq A exon
GAGATAGTCCCACATGGATCATGGATTGGGAAGATGCCTCTGGCTAGACAGGTCCTGTGATGAGGGGCAGGCACACTGGAGCAGAGCTGCAACACTAACTGCCACCAAGGATGTGTGTCTCCTCACACTTCTCTTTTGCGGTAGATTCCTGCAAGCTGGCAAACCTCCTGCTCCCCCTGGTCCTGCTGCTGGAGCCTGCATGCCAGGCGCAGCTGTGAGGCAGATCAGAG
Seq C2 exon
TGAAACTTTACGCTTTAACAAGCCAAGTTATCAATGGGGAGATGCAGTTCTACGCCAGGGCCAAACACTTCTACCAGGAGGTACCAGCCACAGAAGAGGGCATGATGGGAGACTACATTGAGCTCTCCAATATAGACATTGAATCCTCCAGGGAGTTTCTCAGGAAGTTTGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003334-'1-1,'1-0,2-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF058917=Methyltransf_PK=PU(21.4=78.0)
Main Inclusion Isoform:
ENSGALT00000005276fB9367
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGCTTTTAAGTCGCGCT
R:
CCTGAGAAACTCCCTGGAGGA
Band lengths:
299-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]