GgaEX1035947 @ galGal4
Exon Skipping
Gene
ENSGALG00000003334 | METTL11B
Description
methyltransferase like 11B [Source:HGNC Symbol;Acc:HGNC:31932]
Coordinates
chr8:4951239-4964307:-
Coord C1 exon
chr8:4964154-4964307
Coord A exon
chr8:4957255-4957430
Coord C2 exon
chr8:4951239-4951488
Length
176 bp
Sequences
Splice sites
3' ss Seq
AATGATTTATCTGCTTGCAGTGA
3' ss Score
6.42
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATGGCATACAAAGCAGCACATCTGGCTTTTAAGTCGCGCTGGCACAAGACAGACGAAGAACTGTGTCGCCACAGCATGTCATTTGACTTACATAAGGCGATCCAGAATGACTTCTTTCAGTGTTACCTTTATCTGCTGGAAACGCTTCCCCTGG
Seq A exon
TGAAACTTTACGCTTTAACAAGCCAAGTTATCAATGGGGAGATGCAGTTCTACGCCAGGGCCAAACACTTCTACCAGGAGGTACCAGCCACAGAAGAGGGCATGATGGGAGACTACATTGAGCTCTCCAATATAGACATTGAATCCTCCAGGGAGTTTCTCAGGAAGTTTGTTGGG
Seq C2 exon
GGGGTGGGGAAAGCTGGCACCAACCGCGCCCTGGACTGTGGCTCTGGGATAGGTCGGATCAGCAAGCATGTCCTGTTACCAATTTTCAAGAGTGTGGAACTGGTGGATATGATGGAAAATTTCCTGGCTGAGGTCCCGAACTACCTGCAGGGCGAGGAGGACAGAGTAGAAATGTATTATTGCAAAAGCCTCCAGGAATTCACTCCAGCCCCACAAAGATATGATGTCATCTGGATTCAGTGGGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003334-'1-2,'1-1,3-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF058917=Methyltransf_PK=PU(21.4=78.0)
C2:
PF058917=Methyltransf_PK=FE(38.6=100)
Main Skipping Isoform:
ENSGALT00000005276fB9367
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACGAAGAACTGTGTCGC
R:
AGGTAGTTCGGGACCTCAGC
Band lengths:
252-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]