HsaEX6034852 @ hg38
Exon Skipping
Gene
ENSG00000203740 | METTL11B
Description
methyltransferase like 11B [Source:HGNC Symbol;Acc:HGNC:31932]
Coordinates
chr1:170146001-170161668:+
Coord C1 exon
chr1:170146001-170146261
Coord A exon
chr1:170160518-170160693
Coord C2 exon
chr1:170161606-170161668
Length
176 bp
Sequences
Splice sites
3' ss Seq
TAATAATGTTTCATTTGCAGTGA
3' ss Score
8.01
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGTTTAAAATGACAGTCTCAAGTTCATTTAGAAAGAGAAGGCTAATTCAAAGAAACAGCAAGGCAAGCTTCCTTTCTCTGTAGGAATCATTATTATCCCCCTTTGTCATGGCCCACCGGGGAGCCCATTTTGCCTTTAGATCCCGCTGGCAGAAGACCGACGATGAACTCTGTAGACATAGCATGTCTTTTATCCTTCACAAAGCCATTCGCAATGACTTCTTTCAGAGCTATCTCTACCTGCTGGAAAAAATTCCCCTGG
Seq A exon
TGAAATTGTACGCTTTAACAAGCCAAGTCATCAATGGTGAGATGCAGTTCTATGCCAGAGCTAAACTTTTCTACCAAGAAGTACCAGCCACAGAAGAGGGTATGATGGGAAATTTCATTGAACTGTCCAGCCCAGACATCCAGGCCTCTCAGAAATTTCTTAGGAAATTTGTTGGG
Seq C2 exon
GGCATGACAATAGAAGCTACTTCACAGGATAATGTGGAGATCTAATGAGATAATACATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203740-'0-4,'0-3,5-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF058917=Methyltransf_PK=PU(21.4=78.0)
C2:
NA
Main Skipping Isoform:
ENST00000439373fB19829
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAAGGCAAGCTTCCTTT
R:
ACATTATCCTGTGAAGTAGCTTCT
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains