BtaEX6068440 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021298 | METTL11B
Description
methyltransferase like 11B [Source:HGNC Symbol;Acc:HGNC:31932]
Coordinates
chr16:38568049-38585003:+
Coord C1 exon
chr16:38568049-38568202
Coord A exon
chr16:38579417-38579592
Coord C2 exon
chr16:38584754-38585003
Length
176 bp
Sequences
Splice sites
3' ss Seq
TAATAATGTTTTATTTTCAGTGA
3' ss Score
7.49
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATGGCCCACCTGGGAGCCCACTTTGCCTTCAGATCCCGCTGGCAGAAGACCGATGATGAACTCTGTCGACATAGCATGTCCTTTATTCTTCACAAAGCCATTTGCAATGACTTCTTTCAGAGCTATCTCTACCTGCTGGAAAATATTCCCCTGG
Seq A exon
TGAAACTGTATGCTTTAACAAGTCAAGTAATCAATGGTGAGATGCAGTTCTATGCCAGAGCTAAACTCTTCTATCAAGAAGTACCAGCTACAGAAGAGGGTATGATGGGAAATTTCATTGAATTGTCCAACCCAGATATCCAGGCCTCTCAGAAATTTCTCAGGAAATTTGTTGGG
Seq C2 exon
GGGCCCGGGAGAGCTGGCACGGACTGTGCCTTGGACTGCGGCTCTGGGATAGGAAGAGTGAGCAAGCATGTCCTGTTGCCGGTTTTCAACACTGTGGAACTGGTGGACATGATGGAATCGTTCCTCCTCGAAGCACAGAACTACCTGCAGGTCAAAGGCGACAAGGTAGAAAGCTACCACTGCTATAGCCTGCAGGAATTCACACCCCCACTGGGAAGATACGATGTCATCTGGATTCAGTGGGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021298-'0-2,'0-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF058917=Methyltransf_PK=PU(21.4=78.0)
C2:
PF058917=Methyltransf_PK=FE(38.6=100)
Main Skipping Isoform:
ENSBTAT00000034148fB4222
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTTTGCCTTCAGATCCC
R:
TGTCCACCAGTTCCACAGTGT
Band lengths:
247-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]