MmuEX6028775 @ mm10
Exon Skipping
Gene
ENSMUSG00000040113 | Mettl11b
Description
methyltransferase like 11B [Source:MGI Symbol;Acc:MGI:2685053]
Coordinates
chr1:163704003-163725232:-
Coord C1 exon
chr1:163724902-163725232
Coord A exon
chr1:163717083-163717258
Coord C2 exon
chr1:163704003-163704252
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGATAATATTTTCTTTGTAGTAA
3' ss Score
5.39
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
TCCCCATGTCTGCTACCCCTCCCCCTACAACCCATGACAGCCTGTCCTGATATAGATGGGACCTGGGACTGGTTTAAAATGACAGGCTCAAGTTCTTTGAGGAAGCGAAGACTAATTCAAAGGAGCAGCCAGACAAGCGTCCTTTCTCTGCAGGAATAATTACTATCCCCCTTCACCATGGCCCACCTGGGAGCCCATTTTGCCTTTAGATCCCGTTGGCAGAAGACCGACGACGAACTCTGTCGTCATAGCATGTCCTTTATCCTTCACAAAGCCATTCGCAATGACTTCTTTCAGAGCTACCTCTACCTGCTGGAAAAAATTCCCCTGG
Seq A exon
TAAAATTGTATGCTTTAACAAGCCAAGTCATTGATGGTGAGATGCAGTTCTATGCCAGAGCCAAACTTTTCTACCAAGAAGTACCAGCCACAGAAGAAGGCATGATGGGAAATTTTATTGAATTATCCAACCCAGATATCCAAGCCTCTCGTGAATTTCTTAGGAAATTTGTTGGG
Seq C2 exon
GGGCCAGGGAGAGCGGGAACTGGCTGCGCCTTGGACTGCGGTTCTGGAATAGGAAGGGTCAGCAAGCACGTCTTGTTGCCTGTTTTCAGCAGTGTTGAATTGGTGGACATGATGGAATCCTTCCTCCTTGAAGCCCAGAGCTACTTGCAGGTTAACGAGGACAAAGTTGAAAGTTACCACTGCTACAGCCTGCAGGAGTTCACGCCCCACTTAGGGAGATATGATGTCATCTGGATTCAGTGGGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040113-'0-3,'0-2,2-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF058917=Methyltransf_PK=PU(21.4=78.0)
C2:
PF058917=Methyltransf_PK=FE(38.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACCGACGACGAACTCT
R:
TGGGCTTCAAGGAGGAAGGAT
Band lengths:
248-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types