HsaEX6034852 @ hg19
Exon Skipping
Gene
ENSG00000203740 | METTL11B
Description
methyltransferase like 11B [Source:HGNC Symbol;Acc:31932]
Coordinates
chr1:170115142-170135892:+
Coord C1 exon
chr1:170115142-170115402
Coord A exon
chr1:170129659-170129834
Coord C2 exon
chr1:170135643-170135892
Length
176 bp
Sequences
Splice sites
3' ss Seq
TAATAATGTTTCATTTGCAGTGA
3' ss Score
8.01
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGTTTAAAATGACAGTCTCAAGTTCATTTAGAAAGAGAAGGCTAATTCAAAGAAACAGCAAGGCAAGCTTCCTTTCTCTGTAGGAATCATTATTATCCCCCTTTGTCATGGCCCACCGGGGAGCCCATTTTGCCTTTAGATCCCGCTGGCAGAAGACCGACGATGAACTCTGTAGACATAGCATGTCTTTTATCCTTCACAAAGCCATTCGCAATGACTTCTTTCAGAGCTATCTCTACCTGCTGGAAAAAATTCCCCTGG
Seq A exon
TGAAATTGTACGCTTTAACAAGCCAAGTCATCAATGGTGAGATGCAGTTCTATGCCAGAGCTAAACTTTTCTACCAAGAAGTACCAGCCACAGAAGAGGGTATGATGGGAAATTTCATTGAACTGTCCAGCCCAGACATCCAGGCCTCTCAGAAATTTCTTAGGAAATTTGTTGGG
Seq C2 exon
GGGCCTGGGAGAGCTGGAACAGACTGCGCCTTGGACTGCGGCTCCGGGATAGGAAGGGTCAGCAAACACGTCTTATTGCCTGTTTTCAACAGTGTGGAGCTGGTGGATATGATGGAATCCTTTCTCCTTGAAGCCCAGAACTACCTGCAGGTCAAAGGTGACAAAGTAGAAAGCTACCACTGCTACAGCCTGCAGGAATTCACACCCCCCTTCAGGAGATATGATGTCATCTGGATTCAGTGGGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203740-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF058917=Methyltransf_PK=PU(21.4=78.0)
C2:
PF058917=Methyltransf_PK=FE(38.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGCCCATTTTGCCTTTA
R:
TATCCACCAGCTCCACACTGT
Band lengths:
253-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)