GgaEX0028951 @ galGal4
Exon Skipping
Gene
ENSGALG00000003334 | METTL11B
Description
methyltransferase like 11B [Source:HGNC Symbol;Acc:HGNC:31932]
Coordinates
chr8:4947464-4957430:-
Coord C1 exon
chr8:4957255-4957430
Coord A exon
chr8:4951239-4951488
Coord C2 exon
chr8:4947464-4947738
Length
250 bp
Sequences
Splice sites
3' ss Seq
TATTTTCTTGTGTTTCACAGGGG
3' ss Score
9.88
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TGAAACTTTACGCTTTAACAAGCCAAGTTATCAATGGGGAGATGCAGTTCTACGCCAGGGCCAAACACTTCTACCAGGAGGTACCAGCCACAGAAGAGGGCATGATGGGAGACTACATTGAGCTCTCCAATATAGACATTGAATCCTCCAGGGAGTTTCTCAGGAAGTTTGTTGGG
Seq A exon
GGGGTGGGGAAAGCTGGCACCAACCGCGCCCTGGACTGTGGCTCTGGGATAGGTCGGATCAGCAAGCATGTCCTGTTACCAATTTTCAAGAGTGTGGAACTGGTGGATATGATGGAAAATTTCCTGGCTGAGGTCCCGAACTACCTGCAGGGCGAGGAGGACAGAGTAGAAATGTATTATTGCAAAAGCCTCCAGGAATTCACTCCAGCCCCACAAAGATATGATGTCATCTGGATTCAGTGGGTTTCAG
Seq C2 exon
GATGTCTGACAGATAAAGATCTCCTGAAGTTTCTCATCCGGTGCCAGAAAGGCTTGAAGGATAATGGTGTTATCATTCTCAAGGACAATGTAGCCAGGGAGGGCTGTATCCTGGATTGTCTGGACAGTAGTGTGATCCGAGACCTGAACATCCTCCGCAGCCTCATTGAAATGAGTGGACTCATCATCCTGCAAGAGGAGAGGCAGGAGGGATTCCCTGAGCAGTGCGTCCCTGTCTGGATGTTGGCCATGCAGAAACGCCCTGCCCATTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003334-'3-4,'3-2,5-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.4=78.0)
A:
PF058917=Methyltransf_PK=FE(38.6=100)
C2:
PF058917=Methyltransf_PK=PD(39.1=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGCCAAACACTTCTACC
R:
ATTTCAATGAGGCTGCGGAGG
Band lengths:
294-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]