BtaEX6068439 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021298 | METTL11B
Description
methyltransferase like 11B [Source:HGNC Symbol;Acc:HGNC:31932]
Coordinates
chr16:38579417-38586028:+
Coord C1 exon
chr16:38579417-38579592
Coord A exon
chr16:38584754-38585003
Coord C2 exon
chr16:38585757-38586028
Length
250 bp
Sequences
Splice sites
3' ss Seq
CACAAGGTACCTTTCTGCAGGGG
3' ss Score
4.59
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
TGAAACTGTATGCTTTAACAAGTCAAGTAATCAATGGTGAGATGCAGTTCTATGCCAGAGCTAAACTCTTCTATCAAGAAGTACCAGCTACAGAAGAGGGTATGATGGGAAATTTCATTGAATTGTCCAACCCAGATATCCAGGCCTCTCAGAAATTTCTCAGGAAATTTGTTGGG
Seq A exon
GGGCCCGGGAGAGCTGGCACGGACTGTGCCTTGGACTGCGGCTCTGGGATAGGAAGAGTGAGCAAGCATGTCCTGTTGCCGGTTTTCAACACTGTGGAACTGGTGGACATGATGGAATCGTTCCTCCTCGAAGCACAGAACTACCTGCAGGTCAAAGGCGACAAGGTAGAAAGCTACCACTGCTATAGCCTGCAGGAATTCACACCCCCACTGGGAAGATACGATGTCATCTGGATTCAGTGGGTCATTG
Seq C2 exon
GGCACCTGACCGATAAAGACCTTCTTGCGTTTCTTTCCCGGTGCCGAGATGGCCTGAAGGAAAATGGCATCATCATACTGAAGGACAATGTGGCCCGGAAGGGCTGCATCTTCGATCTCTCTGACAGCAGCGTGACTCGGGACATGGACATCCTTCAGACCCTCATTAGGAAGAGTGGGCTGGTGGTGCTAGGCCAGCAGAAGCAGGACGGCTTTCCAGAGCAATGTGTCCCGGTGTGGATGTTTGCGCTGCACAGCGATGGAAGCTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021298-'2-3,'2-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.4=78.0)
A:
PF058917=Methyltransf_PK=FE(38.6=100)
C2:
PF058917=Methyltransf_PK=PD(39.1=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACCCAGATATCCAGGCC
R:
CATCCACACCGGGACACATTG
Band lengths:
293-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]