RnoEX0053965 @ rn6
Exon Skipping
Gene
ENSRNOG00000025415 | Mettl11b
Description
methyltransferase like 11B [Source:RGD Symbol;Acc:1564106]
Coordinates
chr13:81988926-82005741:-
Coord C1 exon
chr13:82005588-82005741
Coord A exon
chr13:81990696-81990945
Coord C2 exon
chr13:81988926-81989949
Length
250 bp
Sequences
Splice sites
3' ss Seq
ACAAGATATCTTTTCTGCAGGGG
3' ss Score
6.52
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATGGCCCACCTGGGAGCCCATTTTGCCTTTAGATCCCGCTGGCAGAAGACCGACGATGAACTCTGTCGTCATAGCATGTCTTTTATCCTTCACAAAGCCATTCGCAATGACTTCTTTCAGAGCTACCTCTACCTGCTGGAAAAAATTCCCCTGG
Seq A exon
GGGCCGGGGAGAGCGGGAACTGGCTGCGCCTTGGACTGCGGTTCTGGAATAGGAAGGGTCAGCAAGCACGTCTTGTTGCCTGTTTTCAGCAGTGTCGAGCTAGTGGACATGATGGAATCCTTCCTCCTCGAAGCCCAGAGCTACTTGCAGGTTAACGAGAACAAAGTTGAAAGTTACCACTGCTACAGCCTGCAGGAGTTCACGCCCCACTTGGGGAGATATGACGTCATCTGGATTCAGTGGGTATCAG
Seq C2 exon
GGTACCTGACCGATAAGGACCTTCTTGCCTTTCTTTCCCGGTGTCGAGATGGCCTGAAAGAAAATGGCGTTATCATTCTGAAGGACAATGTAGCGCGGGAGGGCTGTATCTTTGACCTGTCTGACAGCAGTGTGACTCGGGACATGGACATCCTTCGAAGCCTTATTAGGAAGAGTGGACTGGTGGTTCTGGGCCAGGAGAAACAAGAAGGCTTCCCAGAGCAGTGTGTTCCGGTGTGGATGTTTGCACTGCACAGTGACAGACACTCTTGATCAGCAGTGGGAATGAGCCACCAGACTGGATGACGGTGCCTCAGGACTGGGTGCATCTCCCAGGCACCTTGTGAGATGCAGACAGATATGGAAAGAAGGGAATACAATGCAGGTCTAGAGTGATTGATGACGTAATATGTACCAGCTGCTGCTACCATAATGCACACACTGTGACGTGTGCACGTTTAGATATGCGCTTTCTGTAACGGGATGTTCACAGATGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025415-'0-5,'0-3,4-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(6.1=33.3)
A:
PF058917=Methyltransf_PK=FE(46.1=100)
C2:
PF058917=Methyltransf_PK=PD(46.7=92.3)
Main Skipping Isoform:
ENSRNOT00000076404fB8623
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCACAAAGCCATTCGCA
R:
CTGCTCTGGGAAGCCTTCTTG
Band lengths:
293-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]