HsaEX6034851 @ hg19
Exon Skipping
Gene
ENSG00000203740 | METTL11B
Description
methyltransferase like 11B [Source:HGNC Symbol;Acc:31932]
Coordinates
chr1:170129659-170136878:+
Coord C1 exon
chr1:170129659-170129828
Coord A exon
chr1:170135643-170135892
Coord C2 exon
chr1:170136627-170136878
Length
250 bp
Sequences
Splice sites
3' ss Seq
ATCAAGGTGCCTTTCTGCAGGGG
3' ss Score
5.29
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
TGAAATTGTACGCTTTAACAAGCCAAGTCATCAATGGTGAGATGCAGTTCTATGCCAGAGCTAAACTTTTCTACCAAGAAGTACCAGCCACAGAAGAGGGTATGATGGGAAATTTCATTGAACTGTCCAGCCCAGACATCCAGGCCTCTCAGAAATTTCTTAGGAAATTT
Seq A exon
GGGCCTGGGAGAGCTGGAACAGACTGCGCCTTGGACTGCGGCTCCGGGATAGGAAGGGTCAGCAAACACGTCTTATTGCCTGTTTTCAACAGTGTGGAGCTGGTGGATATGATGGAATCCTTTCTCCTTGAAGCCCAGAACTACCTGCAGGTCAAAGGTGACAAAGTAGAAAGCTACCACTGCTACAGCCTGCAGGAATTCACACCCCCCTTCAGGAGATATGATGTCATCTGGATTCAGTGGGTCTCTG
Seq C2 exon
GGCACCTGACTGATAAGGACCTTCTTGCATTTCTTTCCCGGTGCCGAGATGGCCTGAAAGAAAATGGCATCATCATATTGAAGGACAATGTGGCCCGGGAGGGCTGTATCCTTGATCTCTCTGACAGCAGTGTGACTCGGGACATGGACATCCTCCGGAGCCTAATAAGGAAGAGTGGGCTGGTGGTGCTGGGCCAGGAGAAGCAGGATGGCTTCCCAGAGCAGTGCATCCCCGTGTGGATGTTCGCACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203740-'1-2,'1-1,3-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.4=78.0)
A:
PF058917=Methyltransf_PK=FE(38.6=100)
C2:
PF058917=Methyltransf_PK=PD(39.1=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGTCCAGCCCAGACATC
R:
CGAACATCCACACGGGGATG
Band lengths:
297-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)