HsaEX6034851 @ hg38
Exon Skipping
Gene
ENSG00000203740 | METTL11B
Description
methyltransferase like 11B [Source:HGNC Symbol;Acc:HGNC:31932]
Coordinates
chr1:170161606-170167790:+
Coord C1 exon
chr1:170161606-170161668
Coord A exon
chr1:170166502-170166751
Coord C2 exon
chr1:170167486-170167790
Length
250 bp
Sequences
Splice sites
3' ss Seq
ATCAAGGTGCCTTTCTGCAGGGG
3' ss Score
5.29
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GGCATGACAATAGAAGCTACTTCACAGGATAATGTGGAGATCTAATGAGATAATACATGTCAG
Seq A exon
GGGCCTGGGAGAGCTGGAACAGACTGCGCCTTGGACTGCGGCTCCGGGATAGGAAGGGTCAGCAAACACGTCTTATTGCCTGTTTTCAACAGTGTGGAGCTGGTGGATATGATGGAATCCTTTCTCCTTGAAGCCCAGAACTACCTGCAGGTCAAAGGTGACAAAGTAGAAAGCTACCACTGCTACAGCCTGCAGGAATTCACACCCCCCTTCAGGAGATATGATGTCATCTGGATTCAGTGGGTCTCTG
Seq C2 exon
GGCACCTGACTGATAAGGACCTTCTTGCATTTCTTTCCCGGTGCCGAGATGGCCTGAAAGAAAATGGCATCATCATATTGAAGGACAATGTGGCCCGGGAGGGCTGTATCCTTGATCTCTCTGACAGCAGTGTGACTCGGGACATGGACATCCTCCGGAGCCTAATAAGGAAGAGTGGGCTGGTGGTGCTGGGCCAGGAGAAGCAGGATGGCTTCCCAGAGCAGTGCATCCCCGTGTGGATGTTCGCACTGCACAGCGACAGACACTCCTGAAAAAGCAGTGGGAATGAACGACTGGACTGGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203740-'7-7,'7-6,8-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF058917=Methyltransf_PK=FE(38.6=100)
C2:
PF058917=Methyltransf_PK=PD(39.1=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGACAATAGAAGCTACTTCAC
R:
GGATGCACTGCTCTGGGAAG
Band lengths:
294-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains