MmuEX6028776 @ mm10
Exon Skipping
Gene
ENSMUSG00000040113 | Mettl11b
Description
methyltransferase like 11B [Source:MGI Symbol;Acc:MGI:2685053]
Coordinates
chr1:163702256-163717258:-
Coord C1 exon
chr1:163717083-163717258
Coord A exon
chr1:163704003-163704252
Coord C2 exon
chr1:163702256-163703288
Length
250 bp
Sequences
Splice sites
3' ss Seq
CACAAGGTATTTTTCTGCAGGGG
3' ss Score
5.33
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TAAAATTGTATGCTTTAACAAGCCAAGTCATTGATGGTGAGATGCAGTTCTATGCCAGAGCCAAACTTTTCTACCAAGAAGTACCAGCCACAGAAGAAGGCATGATGGGAAATTTTATTGAATTATCCAACCCAGATATCCAAGCCTCTCGTGAATTTCTTAGGAAATTTGTTGGG
Seq A exon
GGGCCAGGGAGAGCGGGAACTGGCTGCGCCTTGGACTGCGGTTCTGGAATAGGAAGGGTCAGCAAGCACGTCTTGTTGCCTGTTTTCAGCAGTGTTGAATTGGTGGACATGATGGAATCCTTCCTCCTTGAAGCCCAGAGCTACTTGCAGGTTAACGAGGACAAAGTTGAAAGTTACCACTGCTACAGCCTGCAGGAGTTCACGCCCCACTTAGGGAGATATGATGTCATCTGGATTCAGTGGGTCTCAG
Seq C2 exon
GGTACCTGACTGATAAGGACCTTCTTGCATTTCTTTCCCGGTGTCGAGATGGCCTGAAAGAAAATGGTGTTATCATACTGAAGGACAATGTGGCACGGGAGGGCTGTATCTTCGACCTGTCTGACAGCAGTGTGACTCGGGACATGGACATCCTTCGAAGCCTTATTAGGAAGAGTGGACTGGTGGTTCTGGGCCAGGAGAAACAAGAGGGTTTCCCAGAGCAGTGTGTTCCGGTGTGGATGTTTGCACTGCACAGTGACAGGCACTCTTGATCAGCAGTGGGAATGAGCCACCAGACTGAACGATGGTGCTTCGGAATTGGGCGTATCTCCCAGGCACCCTGTGTGATGGAGACAGATATGGAAAGAAGGGATACAATGCATGTCTAGAATGATTGATGACGTAGTATGTACGAGCTCTTGCTACCATAATGCACACACTGTGATGTGTGCACATTTAGATGCATACTCCCTGTAACGAGACGTTCACAAATGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040113-'2-6,'2-3,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.4=78.0)
A:
PF058917=Methyltransf_PK=FE(38.6=100)
C2:
PF058917=Methyltransf_PK=PD(39.1=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAGCCACAGAAGAAGGC
R:
TCTTGTTTCTCCTGGCCCAGA
Band lengths:
304-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types