GgaEX0028951 @ galGal3
Exon Skipping
Gene
ENSGALG00000003334 | METTL11B
Description
NA
Coordinates
chr8:5124662-5138089:-
Coord C1 exon
chr8:5137928-5138089
Coord A exon
chr8:5131914-5132163
Coord C2 exon
chr8:5124662-5128413
Length
250 bp
Sequences
Splice sites
3' ss Seq
TATTTTCTTGTGTTTCACAGGGG
3' ss Score
9.88
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TTAACAAGCCAAGTTATCAATGGGGAGATGCAGTTCTACGCCAGGGCCAAACACTTCTACCAGGAGGTACCAGCCACAGAAGAGGGCATGATGGGAGACTACATTGAGCTCTCCAATATAGACATTGAATCCTCCAGGGAGTTTCTCAGGAAGTTTGTTGGG
Seq A exon
GGGGTGGGGAAAGCTGGCACCAACCGCGCCCTGGACTGTGGCTCTGGGATAGGTCGGATCAGCAAGCATGTCCTGTTACCAATTTTCAAGAGTGTGGAACTGGTGGATATGATGGAAAATTTCCTGGCTGAGGTCCCGAACTACCTGCAGGGCGAGGAGGACAGAGTAGAAATGTATTATTGCAAAAGCCTCCAGGAATTCACTCCAGCCCCACAAAGATATGATGTCATCTGGATTCAGTGGGTTTCAG
Seq C2 exon
GATGTCTGACAGATAAAGATCTCCTGAAGTTTCTCATCCGGTGCCAGAAAGGCTTGAAGGATAATGGTGTTATCATTCTCAAGGACAATGTAGCCAGGGAGGGCTGTATCCTGGATTGTCTGGACAGTAGTGTGATCCGAGACCTGAACATCCTCCGCAGCCTCATTGAAATGAGTGGACTCATCATCCTGCAAGAGGAGAGGCAGGAGGGATTCCCTGAGCAGTGGGTCCCTGTCTGGATGTTGGCCATGCAGAAACGCCCTGCCCATTCCTGATGGCATAATGTGGTGGAGACTGGACTATGGATGAATGACAGGGCTGGGGAGGACAAAGGGGAAGAAAAGCACCTGCTAGAATACTACTAGCTATGTACTGCTACCACTGTAATTCTAAGGCAGCAGCTTCTGAAGGATCAAGAGAATTATAATTGAGCCAGCTTCTCCAAGCAATTGTCTGCTTCTACATCCTGCCTGCTTCACCATTTTAAAAGGACTTTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003334_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(21.1=85.2)
A:
PF058917=Methyltransf_PK=FE(38.1=100)
C2:
PF058917=Methyltransf_PK=FE(38.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGCCAAACACTTCTACC
R:
ATTTCAATGAGGCTGCGGAGG
Band lengths:
294-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]