DreEX6046352 @ danRer10
Exon Skipping
Gene
ENSDARG00000042033 | mettl11b
Description
methyltransferase like 11B [Source:ZFIN;Acc:ZDB-GENE-081104-175]
Coordinates
chr20:34557973-34563604:+
Coord C1 exon
chr20:34557973-34558145
Coord A exon
chr20:34559358-34559610
Coord C2 exon
chr20:34563348-34563604
Length
253 bp
Sequences
Splice sites
3' ss Seq
GGCACGTCTATTTCTAACAGGGT
3' ss Score
6.26
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TGAAACTCTATGCCTTGACCTGTGAGTACATTAAAGGGGAGAAGCAGTTTTACTACAGAGCACAGAACTTCTACAAGGACGTCCCGCCATCTGAAGAGGGCATGATGGGAGATTTTGTGGAAATATCAGACATTGACCTTGAAGGCTCAAGACAGTTCCTGAAGAAGTTTGTT
Seq A exon
GGTCCAGGAAAGGCTGGCACTAAGTGTGCGCTAGACTGTGGCTGTGGAATCGGCAGAGTGTCTAAAGGGGTTCTGTTCCCTGTGTTTGAATCAATGGAGATGTTAGACATGATGGAGGAGTTCATCCTCCACGCTCACGAATGTTACCTTGGGGATTATGCAGACAGAGTGGAGTCCTACTACCTGTACAATCTGCAGGAATTCATTCCCCCTAGAAAGAAATACGATGTCATCTGGATGCAGTGGGTTGCCT
Seq C2 exon
GTCATCTTACTGACAAGGACCTGATGGAGTTTTTAATGCGCGCTAAGGAGAGCTTGAGGCCCAACGGTGTGATCATCATTAAGGACAATATGGCGCGGCAGGGCTGTAAACTGGACCCCATTGACAGCAGCATCATTCGCCACTTGGACATCATGAATGGCATCATTCAGAGAGCAGGCCTCAACATCCTGGACGTGGAAAAGCAGGAAGGCTTTCCTGAGGCCATTGTTCCTGTATGGATGATTGCCATGCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042033-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF058917=Methyltransf_PK=PU(20.9=77.6)
A:
PF058917=Methyltransf_PK=FE(39.1=100)
C2:
PF058917=Methyltransf_PK=PD(39.1=97.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGGGCATGATGGGAGA
R:
CTTCCTGCTTTTCCACGTCCA
Band lengths:
292-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]