GgaEX1037290 @ galGal4
Exon Skipping
Gene
ENSGALG00000009925 | MTA3
Description
metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr3:23389031-23405312:+
Coord C1 exon
chr3:23389031-23389185
Coord A exon
chr3:23393350-23393377
Coord C2 exon
chr3:23405177-23405312
Length
28 bp
Sequences
Splice sites
3' ss Seq
CAATGCTTGTTTCCTTTCAGCGC
3' ss Score
9.53
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
CATGCTGCTCCCCGTGTTCATATAACTAATGGTAAGGCCTTGCAAGCCAGTGCGAGTACCATTAAGACAAGCGCCATTCCTGTGATCAAGAGACAGAGGCAAAATTGGCTTGATGCTTCAGACGATGGTTTCTTTATAGCCACAGAAGAGACCAG
Seq A exon
CGCTGAAGCAGTTAGAAACCTTCTCACG
Seq C2 exon
AAAAATCCGTAAGAAGTTTTCCAGTTTGCAGCTGAAAAGAGCTTCCAGAACACCTTGTTCTCCAATTCTTGCGAAGACAAAATCTCTCATGAACAATAGGCAGGCACGAATAGAGCCAAGAACCATCACGCACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009925_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (disopred):
C1=0.635 A=0.300 C2=0.505
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000016137fB9589
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCATTCCTGTGATCAAGA
R:
GCTCTTTTCAGCTGCAAACTGG
Band lengths:
127-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]