GgaEX1037502 @ galGal3
Exon Skipping
Gene
ENSGALG00000017112 | MTMR6
Description
NA
Coordinates
chr1:181397565-181404400:+
Coord C1 exon
chr1:181397565-181397697
Coord A exon
chr1:181402671-181402780
Coord C2 exon
chr1:181404275-181404400
Length
110 bp
Sequences
Splice sites
3' ss Seq
CATCTTTTGTTTTCTTTCAGTCA
3' ss Score
9.99
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTTAATGCAATGGCAAACAGAGCTGCTGGGAAGGGCTATGAAAATGAAGACAACTACTCTAACATTAGGTTCCAGTTTGTTGGAATTGAAAATATTCATGTAATGAGATCCAGCTTACAAAAACTTCTGGAAG
Seq A exon
TCAGTGGCACGAAGGGTTTGTCTGTCAATGACTTCTTGTCTGGTTTGGAGAATTCTGGATGGCTGCGTCATATCAAAGCTGTGTTGGATGCTGCTGTCTTCCTAGTCAAG
Seq C2 exon
GCAATAGCAGTTGAGAGCGCGAGTGTGTTGGTGCACTGCTCTGATGGCTGGGATAGGACGTCCCAAGTTTGTTCTCTTGGAGCTCTCTTGTTAGATTCCTATTACAGAACAATCAAGGGGTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(10.5=100)
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGGCAAACAGAGCTGC
R:
TGAACCCCTTGATTGTTCTGT
Band lengths:
251-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]