MmuEX6041915 @ mm9
Exon Skipping
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60910831-60912346:+
Coord C1 exon
chr14:60910831-60910963
Coord A exon
chr14:60911755-60911864
Coord C2 exon
chr14:60912221-60912346
Length
110 bp
Sequences
Splice sites
3' ss Seq
AAACCTTCTCTATTTCACAGTGA
3' ss Score
7.61
5' ss Seq
AAAGTAACT
5' ss Score
4.33
Exon sequences
Seq C1 exon
CTCAATGCAATAGCTAACAGAGCAGCTGGAAAAGGTTATGAAAATGAAGACAACTATTCTAATATTAGATTTCAGTTCGTTGGAATAGAAAATATTCATGTCATGAGATCCAGCCTTCAGAAATTACTGGAAG
Seq A exon
TGAATGGTAGCAAGGGGCTTTCTGTCAATGATTTCTACTCTGGTTTGGAAAGTTCAGGATGGCTTCGCCATATCAAGGCTGTTTTGGATGCTGCAATCTTCTTAGCCAAA
Seq C2 exon
GCAATAGTGGTTGAAAATGCAAGTGTGTTGGTCCACTGTTCCGATGGGTGGGACAGGACCTCCCAAGTGTGCTCCCTCGGCTCACTGTTGTTGGATTCCTACTACAGGACAATGAAAGGATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(10.5=100)
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAGCTGGAAAAGGTTA
R:
TGAATCCTTTCATTGTCCTGTAGT
Band lengths:
240-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: